Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0917 ATGGCGAGTCGGTTAAGGGAGGACGAGAAACAGGAGCACGCGATTCGAGCTCTTCTTAGGCTCGAACCGAATCAAAGATGCATTAACTGCAACAGTTTGGGACCACAATATGTGTGCACAAATTTCTGGACGTTTGTTTGCACTGCTTGTAGTGGAATACACCGTGAATTTACACATCGTGTGAAATCAGTTTCAATGGCTAAATTTACTTCGCAAGAAGTTACTGCACTTCAAGAAGGAGGAAATCAGCGTGCAAGAAAGGTTTATTTTAGAGAATGGGATGCACAACATCATTCTTTCCCTGACAGTGATAATGTTAACAGGCTCCGAGACTTTATTAAGCATGTTTATGTGGATAGGAGATTCACCGGAGATAGTACCTCTGACAAACCACCAAGAGTGAAAAACAGTGGTGACAAAGATGGGTCATATGAAAACAGGAGAGTTGAGGCCTATCAGGGAGGATCTAAAAGCCCTCCATATGAAGACTCACATGAACGCCGTTATAGTGACAGGTCTAGTCCAGGTGGAAGAAGTCCTGGATATGATCAAGAAAGTAGGCAAGTTGGTGATTATAAGAGAAGTCCCGGTTGTCCTCCAGTTATCAATGATTGGCGTCGTGAAGATCGTAGAATATCAGATGGAGGTTACAAGACGGAAAGGCATTCCCCTGCACAAGCCAGAAATCTGGGCTCTTCTAGCCCATCTGTGGGTCCATCCGTTAGAGAAATTTTGGGAGAAAATGTAGTACCTCTTAGGATAAGTGGACCTCCCAAACCGAACAATGGAAAAGCTGCCGATGCCTCAGCATTGACACAGAAAACTGCATTCTCTGGTAGCTTGGTATCCAGTAATGAAAGCCAAGTAAATATTAAGCTTGAGACTACTAAGAGTCTTATTGATTTTGATGCTGATCCTGAACCTATTGCTCCCACAATTCCTCAAGCTCAACAAACTAGTGCGCCTCAACCTGTGTCAGGAAATTCCAGTGATGACAATTGGGCCTCTTTTGATATTGCTTCCGAGGCGAAAGCAAATCAAAGCAACTCAAATTTAAATCCACTTGAATCCATACTGTCCCAATTGTCTTATTCGGCATCTTTATCTTCTCATGCTTCGGGAGTCCAAGGACCTATTCCAGCAGGGGCTCTTAGTTTTGGCAGTTTATCAGCTTTCCCATCCAATGGTGCTTTGATGCCATCTTCCGGACAGGAAGTTGTATTACCTCATGATAGTGTAGGACAGTGGGCTAGTTCGCAGCATCAGCAACCAATGTTCTCTGCTGTAAATAGTCAGCCATCGCATGTACCTTCTGTACCCACAGGACAGGGGTATCCAAATACACAAATGCCACATGCATACCATCATGCTTCGAAGCCGGCCAATGAGGCTTTTAATAGTATTCTTTCTCAACCTTCTGCTGTAGAAGCAAAACCAAGTGGAAGAACAGAACTTTCTGAAGATCTGTTCATTAGAAAACTCTCTTCCTTCTCTGCTCCAGTTCAAGAAGGTTGGCAGGCGGGTCTTCCCCAGGGCACGGGCAACTCAATGCAATATAATAATAATGTGGTGCCAATACCAAGTTTTTCGGAGCCATCAAGGTCAACAAATCCATTTGATGTCAGCAGCAAACAAACCCCAGATCAAGACCAAAGTTTTCTTTCCATTTCATCATTGCATGGTGCGTTGCCCAGTGTATCGCCATCACTCCCGATGCACCCTCCATACCAGAGCAATCCATTGCATGGATGGAGTCCACCCCTTCCTAATGTAGGCACTATGTACTCTAATGTAGGCACTATGTACTCTTCAAGCCTGGGTTTGCAACCACATGCATGGAATCCACCTCTGCCTAATATACCATCTTCAGGCACTATGCACTTTTCAAGCCTGGGTTTGCAACCACATGCATGGAATCCACCTCTGCCTAATATACCATCTTCAGGCACTATGCACTCTTCAAGCCTGGGTTTGCAACCACATGCATGGAATCCACCCCTGCCCAATATACCATCTTCAGGCACTTTGCACCCTTCAAGCCTGGGCAATCCATCCCATGCCTGGAATCCAACCCTATCGTCACCATATGCATCATTCCTACCTCCACAAGCACCAATTCATGCATCAGCATTGGGACTAGGGTCTAACAATGGGCAGCAAATGCCACCTAACACACCAATGCCAAGGCAAGAAGATGGGAATTTTGGAGCTGAGCGAGACATTTTCGGCTTGTCAAATCCAGATCAGCAGCTGACTGTTACACATGCATAG 2271 0.4522 MASRLREDEKQEHAIRALLRLEPNQRCINCNSLGPQYVCTNFWTFVCTACSGIHREFTHRVKSVSMAKFTSQEVTALQEGGNQRARKVYFREWDAQHHSFPDSDNVNRLRDFIKHVYVDRRFTGDSTSDKPPRVKNSGDKDGSYENRRVEAYQGGSKSPPYEDSHERRYSDRSSPGGRSPGYDQESRQVGDYKRSPGCPPVINDWRREDRRISDGGYKTERHSPAQARNLGSSSPSVGPSVREILGENVVPLRISGPPKPNNGKAADASALTQKTAFSGSLVSSNESQVNIKLETTKSLIDFDADPEPIAPTIPQAQQTSAPQPVSGNSSDDNWASFDIASEAKANQSNSNLNPLESILSQLSYSASLSSHASGVQGPIPAGALSFGSLSAFPSNGALMPSSGQEVVLPHDSVGQWASSQHQQPMFSAVNSQPSHVPSVPTGQGYPNTQMPHAYHHASKPANEAFNSILSQPSAVEAKPSGRTELSEDLFIRKLSSFSAPVQEGWQAGLPQGTGNSMQYNNNVVPIPSFSEPSRSTNPFDVSSKQTPDQDQSFLSISSLHGALPSVSPSLPMHPPYQSNPLHGWSPPLPNVGTMYSNVGTMYSSSLGLQPHAWNPPLPNIPSSGTMHFSSLGLQPHAWNPPLPNIPSSGTMHSSSLGLQPHAWNPPLPNIPSSGTLHPSSLGNPSHAWNPTLSSPYASFLPPQAPIHASALGLGSNNGQQMPPNTPMPRQEDGNFGAERDIFGLSNPDQQLTVTHA* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0917 756 MobiDBLite consensus disorder prediction 203 218 - -
Psa1g0917 756 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Psa1g0917 756 PANTHER ARFGAP/RECO-RELATED 667 752 IPR044820 GO:0005096
Psa1g0917 756 PANTHER ARFGAP/RECO-RELATED 1 607 IPR044820 GO:0005096
Psa1g0917 756 MobiDBLite consensus disorder prediction 531 550 - -
Psa1g0917 756 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Psa1g0917 756 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Psa1g0917 756 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Psa1g0917 756 PANTHER ARF GTPASE ACTIVATOR 667 752 - -
Psa1g0917 756 PANTHER ARF GTPASE ACTIVATOR 1 607 - -
Psa1g0917 756 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Psa1g0917 756 CDD ArfGap_AGFG 14 122 - -
Psa1g0917 756 MobiDBLite consensus disorder prediction 123 238 - -
Psa1g0917 756 SUPERFAMILY ArfGap/RecO-like zinc finger 13 123 IPR037278 -
Psa1g0917 756 Gene3D Arf GTPase activating protein 2 133 IPR038508 -
Psa1g0917 756 MobiDBLite consensus disorder prediction 123 147 - -
Psa1g0917 756 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0917 Psa-Chr1 61328455 61337970 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0917 15 122 C2H2 Transcription Factor Family AT4G05330 32.743 2.21e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0917 - - mtr:MTR_6g086630 885.945