Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0908 ATGTCGAGATCGTTGGTTCAACCAGTAGGTCAAAAGCGATTAACAAACGTAGCCGTTGTTCGTCTCAAAAAACACGGCATGCGATTCGAAATCGCTTGTTACCCTAACACCGTCCTTTCATGGCGTTCCGGCGTTGAAAAGGATATTGATGAAGTGGTGCAGTCTCGCACCGTTTATACAAATGTTTCTAAAGGCGTTCTTGCTAAATCTAAGGATTTAAACGCTGCTTTTGGTACTGATGATCACTCCAATATATGCTTAGAGATTTTAAAGAAGGGGGAACTTCAGGTTGCTGGCAAAGAGAGGGAATCAATGCTGTCTAGTCAGTTCAGGGACATTGCCACCATTGTAATGCACAAAACTTTTAATCCTGAGACTAAGCGCCCTTACACTATCAGCATGATTGAGCGCCTCATGAAGGATATTCACTTTGCAGTTGATCCAAACAGCACCTCCAAGAAGCAGGCTCTGGAGTTGATTCAGGAGCTTCAAAAGCACTACCCTATAAGACGGTGTCCATTGAGGATACGCGCTGCTGCCCCTGAGGAGGAAGTACCTGTCCTTTTAGAAAAGCTGAGCGAGTGGAAGGCAACCGTTATTTCTAAAGAAGGGACTGCTGCTCAGTTATCTGTTGTTTTTGAATTAGAACCTGGTCTATATAAGGATTGTCATGACTTTGTTATGAATAAGATGCATGGGAGATTTGAAGTTCTTGCCCACTCTCTTTATGTGGACGGGGACACCCATGTGGATCAATACAATGATCATGATGACATGCCTGCACCACTGCCCACAAACACTCCTGAATCTGTGCTTGAGCTGAATGATAAACTTAAGAAGCAAACAATTTCTAGTGCAACTAAGCCTACTGAGGTACAACAACCAAAGCAAAACAAATGCAACACATGTGACGCATCTTTTGAAGATGTTAAGTTGTACAGGGAACACCACAAGAGTGAGTGGCACAAGCACAATATGAAGCGTAAAACGAGGCAACTCCCTCCACTCACTGAAGAAGAGTGCACAGCAGATATCGATTTGTTTGAATCAAAATCTGATTTAAAGGATTATTCATTTTGA 1080 0.4287 MSRSLVQPVGQKRLTNVAVVRLKKHGMRFEIACYPNTVLSWRSGVEKDIDEVVQSRTVYTNVSKGVLAKSKDLNAAFGTDDHSNICLEILKKGELQVAGKERESMLSSQFRDIATIVMHKTFNPETKRPYTISMIERLMKDIHFAVDPNSTSKKQALELIQELQKHYPIRRCPLRIRAAAPEEEVPVLLEKLSEWKATVISKEGTAAQLSVVFELEPGLYKDCHDFVMNKMHGRFEVLAHSLYVDGDTHVDQYNDHDDMPAPLPTNTPESVLELNDKLKKQTISSATKPTEVQQPKQNKCNTCDASFEDVKLYREHHKSEWHKHNMKRKTRQLPPLTEEECTADIDLFESKSDLKDYSF* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0908 359 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Psa1g0908 359 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Psa1g0908 359 Gene3D - 174 251 - -
Psa1g0908 359 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Psa1g0908 359 Pfam SBDS protein, domain II 111 170 IPR018978 GO:0042254
Psa1g0908 359 SUPERFAMILY beta-beta-alpha zinc fingers 293 345 IPR036236 -
Psa1g0908 359 Pfam SBDS protein, C-terminal domain 175 238 IPR046928 -
Psa1g0908 359 TIGRFAM RNA_SBDS: rRNA metabolism protein, SBDS family 13 232 IPR002140 GO:0042256
Psa1g0908 359 PANTHER BNAANNG06530D PROTEIN 1 359 - -
Psa1g0908 359 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 359 IPR039100 -
Psa1g0908 359 Gene3D - 1 96 IPR036786 -
Psa1g0908 359 Gene3D - 100 172 IPR037188 -
Psa1g0908 359 ProSitePatterns Zinc finger C2H2 type domain signature. 300 322 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0908 27 359 C2H2 Transcription Factor Family AT1G43860 56.232 1.09e-136 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0908 K14574 - gmx:100797497 612.838