Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0881 ATGAGGAGAAAACAGCATTATTCGAATCCGTCGTGTGTTTTTGTTCTTCTTTTTTCATTCTTCCTAGGTTTAACAACACTAGTCTCTTCTGCTGTTTCATCGTATCATGTCTCAGATGGGTCCCTCACGGATGCTGAAACGATGTACATCAAACATCGACAACTTCTTTACTACAGAGACGAGTTTGGCGATAGAGGTGAAAATGTTACGGTGGATCCATCACTAGTTTTTCAAAACGACCGCATCAAAAACGCTTACGTGGCGTTACAAGCTTGGAAACAAGCTATTCTTTCTGATCCAAACAACTGCACCGTTGATTGGGTGGGTTCCAATGTGTGCAGCTACACTAATGTTTTCTGTGCACCTGCATTGGATAACCCTCAGATCCAAACGGTTGCCGGAATCGATCTTAATCACTGTGATATCGCCGGATATTTGCCGGAGGAGCTTGGTTTGTTAACTGATCTTGCTCTTTTTCATGTCAATACCAACAGATTCTGTGGAACGGTTCCTCATAAATTTGAGAAGCTCAAAATCTTGTTCGAGTTGGATCTAAGTAATAACCGCTTTGCCGGAAAGTTTCCGGAGGTTGTTCTCCGGTTACCCTTGTTGAAGTTTCTAGATCTGAGGTTCAATGAGTTTGAAGGTACGGTTCCGAAGGCGCTTTTTGATAAAGATTTGGATGCGATTTTCATCAATCATAACAGATTTGTTTTCGATTTACCGGATAATTTTGGTAATTCGCCGGTTTCGGTGATTGTTCTGGCGAATAACCGTTTCCACGGTTGTTTTCCGGCGGGGATAGGAAACATGACGAATTTGAACGAGATTATTGCGATGAATAACGGTTTGCAATCGTGTTTGCCGGCGGAGATAGGGTTGTTGAAGAATTTGACGGTGTTTGATGTTAGTTTTAACAAATTGTTGGGACCTTTGCCGTCGGCGATTGGAAATGCGGTGGGTTTGGAACAGTTGAACGTGGCGCATAATATGCTTTCTGGTCAGATTCCGGAGAGTATTTGTGCGTTGCCAAATTTGGAGAACTTTACTTATTCGTATAATTTCTTTACCGGCGAACCACCACGGTGCTTGGCTTTACCGGCTTTTGATGATGAACGTAACTGTTTGCCGGCAAGAAAGAATCAACGGTCGGCGAGGGAATGTAAGTCGTTTTTGTCTCACCCTATTGATTGCAGCTCTTTTAGGTGTAAAGCTTTTGTTCCTTCTTTGCCTTCACCACCACCTTCTCCCCCTGTTGTTGTTATTCCACAATCTCCTCCTCCACCGGTTCTTTCACCACCACCGCCAGTTATCATCCCTCCACCTTCGCCCGTGTTTTCTCCACCACCTCCACCTCCGCCTGTGTTGTCTCCACCACCTCCACCTCCACCAGTATATTCACCGCCGCCTCCTCCTCCATCACCGCCTCCTCCTTCACCTCCACCACCTCCTCCTCCAGTGTATTCTCCACCCCCACCTCCACCATCACCTCCACCACCTTCTTCCCCACCACCACCTCCACCACTGTATTCTCCACCACCACCTCCACCTTCACCCCACCACCCTCTCCACCTCCTCCAGTTTTACCCACCACCTCCACCTCACCACCGCCGCCGCCACCTCCAGTAA 1629 0.4702 MRRKQHYSNPSCVFVLLFSFFLGLTTLVSSAVSSYHVSDGSLTDAETMYIKHRQLLYYRDEFGDRGENVTVDPSLVFQNDRIKNAYVALQAWKQAILSDPNNCTVDWVGSNVCSYTNVFCAPALDNPQIQTVAGIDLNHCDIAGYLPEELGLLTDLALFHVNTNRFCGTVPHKFEKLKILFELDLSNNRFAGKFPEVVLRLPLLKFLDLRFNEFEGTVPKALFDKDLDAIFINHNRFVFDLPDNFGNSPVSVIVLANNRFHGCFPAGIGNMTNLNEIIAMNNGLQSCLPAEIGLLKNLTVFDVSFNKLLGPLPSAIGNAVGLEQLNVAHNMLSGQIPESICALPNLENFTYSYNFFTGEPPRCLALPAFDDERNCLPARKNQRSARECKSFLSHPIDCSSFRCKAFVPSLPSPPPSPPVVVIPQSPPPPVLSPPPPVIIPPPSPVFSPPPPPPPVLSPPPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSSPPPPPPLYSPPPPPPSPHHPLHLLQFYPPPPPHHRRRHLQ* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0881 542 PRINTS Proline rich extensin signature 407 419 - -
Psa1g0881 542 PRINTS Proline rich extensin signature 428 444 - -
Psa1g0881 542 PRINTS Proline rich extensin signature 449 461 - -
Psa1g0881 542 PRINTS Proline rich extensin signature 461 482 - -
Psa1g0881 542 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 19 504 - -
Psa1g0881 542 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 4 19 504 - -
Psa1g0881 542 SUPERFAMILY L domain-like 87 367 - -
Psa1g0881 542 MobiDBLite consensus disorder prediction 464 542 - -
Psa1g0881 542 Gene3D Ribonuclease Inhibitor 246 386 IPR032675 -
Psa1g0881 542 Gene3D Ribonuclease Inhibitor 86 245 IPR032675 -
Psa1g0881 542 MobiDBLite consensus disorder prediction 464 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0881 Psa-Chr1 58771335 58773827 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0881 38 403 Leucine-rich Repeat extension Gene Families AT3G24480 76.294 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0881 - - mtr:MTR_6g086115 687.182