LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa1g0863	ATGAATTCACAACCTAACAACCATAGTACAGAATCTAAGGAGGTTGGTAGTTCAAGTTCTAATTCGAGCGGAAATAATAACTTACCTCAAAAAAAGATTTTGTCCGATTCGAAGTTTCAACCTATGACAGAGCCACCAGGTGCATTAAACCAGTTTGGTCATAGGTTTCCGGATGTATTTCAACAAAAGGGTGGAAGCTATGCAGATCTTCCTGCTGCCAAAATTTCCGAGCTAATGAAATCCTCAAGTTTGGATAATGCTCCTACTCAATCACTTTTGAGCGTTGTGAATGGTATCCTAGAAGAAAGTGTTGAAAGAAGAAATGGCGAAATACCACCTCGCGTGGCTTGTTTGTTAAGAAAAGTTGTTCAAGAGATCGAGCGGAGAATATCAACACAACAAGGACATTTAAGAACTCAAAACAATCTTTTTAAGACTCGTGAGGAAAAATATCAATCAAGAATAAGAGTACTTGAAGCTCTTGCATCAGGAACCAAGGAGGAGAATATCATAATAAAGGAAGAAAAAATTGCACATGACTCAAAACCAATTGAGAAGATTGTAATAGAAGAAAAGAAGACAAATGATACGAATCATGAAGAAAAGACTAAAGAGGATGAAAAAAAGAAAGAAATTGATAGAGAAGTTATTAGATTGATGAAAGAAGTGGAAGACAAAAACATGGAAAAGAAGGAGATTGATAAAGAAGTAAAGAGATTGATTAAAGATATGGAAGGAAAAAATGCGGAAATTTCAACATTCAAACAAGAACTAGAAGCAATGAAAAAAAGATATGAAGAAAAAAATGCGGAAATTTCAACATTCAAACAAGAACTAGAAGCAATGAAAAAAAGATATGAAGAAAAATGTTCAAAGATGGAAAATATGGAAAGGAAGGAAATTCATAAAGAAGTGGAAGGAAAAAATATGAAAAGGAACGAAATTGATGAAGAAGTTATGAGATTGAAGAAAGAGGTGGAAGGAAAAAATATGGAAAAGAAGGAAATTGATGAAGAAGTTATGAGATTGAAGAAAGAGGTGGAAGGAAAAAATATGGAAAAGAAGGAAATTGATGAAGAAGTTATGAGATTGAAGAAAGAGGTGGAAGAAAAAAGTATTGAAAAGAAGGAAGTTGATAAAGTAGTTATTAGATTGATCAAAGAGTTGGAAGAAAAAAATATGGAAATTTCGACGACGAAGCAAGAACTTGAATCAACGAAGAATAGATACGAAGAACAATGTTCAAAGTTGGAATCAGAAGTTAAGGATGCTAAAGGAGAATTGAAACAGAAATTGCAAGAGTATGAGGCTAAAATGGAGAAATTAAGAAATACGGTTAGAGAGAGTGAAGCTATTATGGAGTCAAAATATCAGAAGTGGAACATGAAACAGAAAATTATGCAGAAAGCTATGAGTTTTCAGTTTAGTTCCATACAGAAATTGAATTTGGCTTGGGAATCTATCAAGCAAGATGTTGTGAAAGAGCGAATGATTTACTCGGAGGAATGCAATCGATTAGGTGTAAATCTTAAACCACTGGTAAATGCAGCTGAGAATTATCAAACCGTTCTTGCTGAAAATAGAAAAATCTTCAATGAACTTCAAGAATTAAAAGGAAATATTAGAGTATATTGTCGAGTTAGGCCATTTATTCCTGGACAAAAAGAAAAACAATCTATTGTCGAACGCATTGGTGAATCAGATTTGGTTGTAGCGAATCCTTCCAAACTAGGGAAAGAAGCACTCAAAACATTCAAGTTTAATAAGATCTTTGGTCCTACCTCAACTCAAGCTGAGGTGTATGATGACATACAAGCCTTTATAAGATCAGTACTTGATGGTTTTAATGTCTGCATATTTGCTTATGGACAGACTGGTTCTGGAAAAACTTATACAATGAGTGGTCCAAATAATGCAACCAATGAGAATCTTGGTGTTAACTATCGTGCTCTAAACGATCTCTTCAACATATCCTCAAGTCGACAAAGTTCCATAGTTTATGACATTGGAGTTCAAATAATTGAGATCTATAATGAACAAGTTCGAGATTTGTTAACAACCGATACAGCTATCAAAAAACTTGGGATATTGAATCACTCTCAACCAAATGGTTTAGCAGTCCCTGATGCCAGCATGCACCCCGTCAAATCAACCGGTGATGTCATAAAACTAATGGACATTGGTTTAAAAAATAGAGCAAAGAGTTCAACTTCCATGAATGAAAGAAGTAGTCGTTCTCACAGTGTGGTTTCGATTCATGTTCGTGGGGCGGATAAGAAATCTGGTTCGACTCTCCAAGGTAACCTTCATCTGATAGATTTGGCAGGAAGTGAAAGGATAGACCGCTCTGAAGTAGTAGGAGATAGACTAAAGGAAGCACAACATATTAACAAATCATTGTCGGCTCTTGGCGATGTCATTTTCGCACTTTCTCAAAAGAGTTCTCATATACCATATAGAAACAGCAAACTCACACAAATTTTGCAATCCTCTCTAGGTGGTCATGCAAAGACACTCATGCTAGTTCAAATAAATTCAGACGTAAAGTCTTATTCTGAATCTTTGAGTACTTTGAAGTTTGCTGAGAGGGTTTCTGGAGTTGAGTTAGGAGTTGCAAAAAGTACAAAAGATGGAAGAGATGTTAGAGAATTAATGGAACAGGTGGCTTCTCTGAAAGACACGATTTCGACAAAAGACGAAGAAATCGAGCGACTACAATTACTTAAGGATCTAAAAAATGTTAGTAATACTGAGAAGCTTGAAGATTAA	2769	0.3514	MNSQPNNHSTESKEVGSSSSNSSGNNNLPQKKILSDSKFQPMTEPPGALNQFGHRFPDVFQQKGGSYADLPAAKISELMKSSSLDNAPTQSLLSVVNGILEESVERRNGEIPPRVACLLRKVVQEIERRISTQQGHLRTQNNLFKTREEKYQSRIRVLEALASGTKEENIIIKEEKIAHDSKPIEKIVIEEKKTNDTNHEEKTKEDEKKKEIDREVIRLMKEVEDKNMEKKEIDKEVKRLIKDMEGKNAEISTFKQELEAMKKRYEEKNAEISTFKQELEAMKKRYEEKCSKMENMERKEIHKEVEGKNMKRNEIDEEVMRLKKEVEGKNMEKKEIDEEVMRLKKEVEGKNMEKKEIDEEVMRLKKEVEEKSIEKKEVDKVVIRLIKELEEKNMEISTTKQELESTKNRYEEQCSKLESEVKDAKGELKQKLQEYEAKMEKLRNTVRESEAIMESKYQKWNMKQKIMQKAMSFQFSSIQKLNLAWESIKQDVVKERMIYSEECNRLGVNLKPLVNAAENYQTVLAENRKIFNELQELKGNIRVYCRVRPFIPGQKEKQSIVERIGESDLVVANPSKLGKEALKTFKFNKIFGPTSTQAEVYDDIQAFIRSVLDGFNVCIFAYGQTGSGKTYTMSGPNNATNENLGVNYRALNDLFNISSSRQSSIVYDIGVQIIEIYNEQVRDLLTTDTAIKKLGILNHSQPNGLAVPDASMHPVKSTGDVIKLMDIGLKNRAKSSTSMNERSSRSHSVVSIHVRGADKKSGSTLQGNLHLIDLAGSERIDRSEVVGDRLKEAQHINKSLSALGDVIFALSQKSSHIPYRNSKLTQILQSSLGGHAKTLMLVQINSDVKSYSESLSTLKFAERVSGVELGVAKSTKDGRDVRELMEQVASLKDTISTKDEEIERLQLLKDLKNVSNTEKLED*	923

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa1g0863	922	Coils	Coil	881	908	-	-
	Psa1g0863	922	MobiDBLite	consensus disorder prediction	1	37	-	-
	Psa1g0863	922	PRINTS	Kinesin heavy chain signature	614	635	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Psa1g0863	922	PRINTS	Kinesin heavy chain signature	737	754	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Psa1g0863	922	PRINTS	Kinesin heavy chain signature	768	786	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Psa1g0863	922	PRINTS	Kinesin heavy chain signature	817	838	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Psa1g0863	922	ProSiteProfiles	Kinesin motor domain profile.	540	867	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Psa1g0863	922	Gene3D	Kinesin motor domain	481	869	IPR036961	-
	Psa1g0863	922	PANTHER	KINESIN MOTOR CATALYTIC DOMAIN PROTEIN	25	909	-	-
	Psa1g0863	922	PANTHER	KINESIN-LIKE PROTEIN KLP-3	25	909	-	-
	Psa1g0863	922	Coils	Coil	209	299	-	-
	Psa1g0863	922	Pfam	Kinesin motor domain	546	865	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Psa1g0863	922	Coils	Coil	305	459	-	-
	Psa1g0863	922	MobiDBLite	consensus disorder prediction	1	44	-	-
	Psa1g0863	922	SMART	kinesin_4	538	875	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
	Psa1g0863	922	Gene3D	-	231	266	-	-
	Psa1g0863	922	Gene3D	-	375	418	-	-
	Psa1g0863	922	Gene3D	-	267	294	-	-
	Psa1g0863	922	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	540	905	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa1g0863	Psa-Chr1	57901999	57907418	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa1g0863	528	901	Calmodulin-binding Proteins	AT5G65930	37.037	7.27e-66	239

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa1g0863	K10406		-	gmx:100779403	1103.97

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa1g0863	1	57901999	57907418	Psa1g0863	1	57901999	57907418	ECH