Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0859 ATGGAGGAAAATCTACCTCCTGGTTTTAGGTTTCATCCAACAGATGAAGAACTCATTACTCATTATCTTACAATGAAAATTTCTGATACTTCCTTCACATCAAAAGCTGTTGCAGTTGTTGATCTCAATAAATCTGAACCTTGGGATCTCCCAGGTAAAGCTTCAATGGGAGAGAAAGAATGGTATTTTTTCAGCATGAGAGATAGAAAATATCCAACTGGTCTTCGAACCAATCGAGCTACTGAATCAGGATACTGGAAAACAACAGGAAAAGATAGAGAAATATTTCGTGGTGGAGTTTTGGTTGGAATGAAGAAAACCCTAGTCTTCTATAAGGGTAGAGCTCCAAGAGGTGAAAAAAGTAATTGGGTTATGCATGAATATAGACTTGAAAACAAACACCATTTTCGAACCTCAAAGGATGAATGGGTGGTTTGTAGGGTTTTCCAAAAGAGCATAGCAACAAAGAAGCCACAACAAACATCATCTTCTCAACAAGAATCTCCATGTGACACAACCTCAATGGTGAATGAATTTGGTGATGTAGAGTTTCCAAATCTAAATGGTATTGCAAACTCATCATCATCATTATCAAGTGGATTAATCACTAGCATGATTTCAGGACAACAACAAACTTTCAACATCAATGATCATCTCACTAATAATGTTAACACAAATATGAACTTGACAATGAATTGGCCATCTTCAAGTGAAGTTCCATCTCTACCATGGCCTTCTAACTTGTTGAATCCAAATAATATTTCTGTAAATTCATTGCTTCTTAAGGCATTACAGCTTAGGAATTATCAACAACAAAGAGAAGTTGCAGCTACAAATCATTTTGTACCATACATGCCTCAACAAGGAGTAGTATATGATCAACTTGGAATGGATCACCAAAGTAATAACTCAAATGATCCAAGTGCTTCTTCTTCAAAAGTTTTAGAATGTATGCCACAGCATCAACAGGAGCAACCATTCAATTTGGACTCCATTTGGTGA 1002 0.3633 MEENLPPGFRFHPTDEELITHYLTMKISDTSFTSKAVAVVDLNKSEPWDLPGKASMGEKEWYFFSMRDRKYPTGLRTNRATESGYWKTTGKDREIFRGGVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLENKHHFRTSKDEWVVCRVFQKSIATKKPQQTSSSQQESPCDTTSMVNEFGDVEFPNLNGIANSSSSLSSGLITSMISGQQQTFNINDHLTNNVNTNMNLTMNWPSSSEVPSLPWPSNLLNPNNISVNSLLLKALQLRNYQQQREVAATNHFVPYMPQQGVVYDQLGMDHQSNNSNDPSASSSKVLECMPQHQQEQPFNLDSIW* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0859 333 PANTHER BNACNNG63190D PROTEIN 2 269 - -
Psa1g0859 333 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
Psa1g0859 333 MobiDBLite consensus disorder prediction 301 333 - -
Psa1g0859 333 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 269 - -
Psa1g0859 333 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Psa1g0859 333 Gene3D NAC domain 14 154 IPR036093 GO:0003677|GO:0006355
Psa1g0859 333 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0859 Psa-Chr1 57708895 57711765 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0859 1 333 NAC Transcription Factor Family AT3G18400 57.895 2.37e-116 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa1g0859 NAM 1.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0859 - - gmx:100787111 449.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0859 1 57708895 57711765 Psa1g0859 1 57708895 57711765 ECH