Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0854 ATGGCTGAATTCACAGAAAATTTTCAAAATATTATTAGACCCTCTTTCCCTTTTCTTGATTCTGATCAAAGCATGGAACTTTTGAATCAGTTCATGGAGAATTCAAACATGAACATGATGCAGAATTTGATGCCTTATTCTTGTGACAACATCTTGGAACATCATCAGCAACATCAACAAGAACAAGAACACGTGTTTCCAAGAAACTTGGAAGAGAATTTTCATGGTCTTGTTCATCATCATCATCATCATCTTGTTAATAATGCAGTTCAAGTTTCACTTCAAAATCTTCAAGAAGAAAATAAAGTTCGTGATGGTAAAAAGAGGAAAATGATGGATTTTCAAGAGACTAGTTCTGCAAATTCAACTCCTGTAGTTTCTGAAAGTGGAAGCAAAACCAAATTTAGTGGTGGAAGAGGAAAAAAAGTGAAAAGCTATGAAACAGAAGAAGAAAAAGCAAAGGAAGTTGTTCATGTTAGAGCAAGAAGAGGTCAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAGAAATTAAGATGCTTGCAGAATATTGTTCCAGGATGTTACAAGACCATGGGAATGGCAGTAATGTTGGATGAAATCATAAACTATGTTCAGTCATTGCAGCATCAAGTAGAGTTTCTTTCATTGAAGCTTACTGCAGCAAGTACTTATTATGATTTCAATTCAGAGGCAGATGATTTAGAAACAATGCAGAGAGCAAGAGCATCTGAGGCAAAGGAATTAGCAATGTATAAGAGAGAAGGATATGGTGGAATTTCATGCTTTCAACCAACTTGGCCACTTTGA 831 0.3562 MAEFTENFQNIIRPSFPFLDSDQSMELLNQFMENSNMNMMQNLMPYSCDNILEHHQQHQQEQEHVFPRNLEENFHGLVHHHHHHLVNNAVQVSLQNLQEENKVRDGKKRKMMDFQETSSANSTPVVSESGSKTKFSGGRGKKVKSYETEEEKAKEVVHVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTYYDFNSEADDLETMQRARASEAKELAMYKREGYGGISCFQPTWPL* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0854 276 Coils Coil 242 262 - -
Psa1g0854 276 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 215 IPR011598 GO:0046983
Psa1g0854 276 MobiDBLite consensus disorder prediction 115 134 - -
Psa1g0854 276 PANTHER TRANSCRIPTION FACTOR BEE 1 2 275 - -
Psa1g0854 276 Pfam Helix-loop-helix DNA-binding domain 169 216 IPR011598 GO:0046983
Psa1g0854 276 Gene3D - 161 233 IPR036638 GO:0046983
Psa1g0854 276 MobiDBLite consensus disorder prediction 115 149 - -
Psa1g0854 276 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 232 IPR036638 GO:0046983
Psa1g0854 276 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 275 IPR024097 GO:0006355
Psa1g0854 276 SMART finulus 171 221 IPR011598 GO:0046983
Psa1g0854 276 CDD bHLH_AtBPE_like 155 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0854 Psa-Chr1 57437365 57439465 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0854 58 276 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 52.381 4.06e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa1g0854 HLH 0.00018 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0854 - - gmx:100806942 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0854 1 57437365 57439465 Psa1g0854 1 57437365 57439465 ECH