Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0849 ATGTCCTTCTTCTCCGGCCTCTGCGCCTGCATGCAGAGGCGCCTGAAGAAGGGCGGCACAGCCTCCGAACACGGAGGCGATGACGATAAAGATACTATCGACGCTGGCGATTCTTCCAACTTGTTATTCGATCTTCACACTCTTCAACTCGCCACCAATTTCTTCTCTGAGCTTAATCAACTTGGTCGTGGAGGCTTTGGTCCTGTTTTCAAGGGATTGATGCCAAATGGTGAAGAAGTGGCAATTAAAAAACTTTCATTGGAATCTAGACAAGGAATTAGAGAATTTACCAACGAAGTTCGGCTATTACTAAGAATTCAGCATAAGAATTTAGTCACTTTACTAGGTTGTTGCGCAGAAGGACCCGAAAAAATGCTTGTCTATGAATATCTACCAAACAAAAGCCTTGATCACTTTCTGTTTGATAAAAAGAGGTCTTTGGATTGGACGACACGGTTTCGAATAGTTACCGGTATCACAAGAGGACTTCTCTATCTGCATGAAGAGGCCCCGGAAAGAATTATTCACAGAGACATTAAAGCTAGTAACATATTGCTGGACGAGAAATTAAATCCGAAAATCTCAGACTTCGGTTTGGCAAGGCTGTTTCCTGGAGAGGACACTCATGTGCAAACATTTAGGATTTCCGGTACACACGGTTACATGGCTCCTGAATATGCAATGCGTGGCTATCTTTCTGTAAAGACTGATGTTTTTAGTTATGGAGTCTTGGTGTTGGAAATAGTTAGTGGGAGAAAAAACCATGATGTGAAGCTTGGTTCAGAAAAGGCAGATCTACTAAGCTATTAA 810 0.4247 MSFFSGLCACMQRRLKKGGTASEHGGDDDKDTIDAGDSSNLLFDLHTLQLATNFFSELNQLGRGGFGPVFKGLMPNGEEVAIKKLSLESRQGIREFTNEVRLLLRIQHKNLVTLLGCCAEGPEKMLVYEYLPNKSLDHFLFDKKRSLDWTTRFRIVTGITRGLLYLHEEAPERIIHRDIKASNILLDEKLNPKISDFGLARLFPGEDTHVQTFRISGTHGYMAPEYAMRGYLSVKTDVFSYGVLVLEIVSGRKNHDVKLGSEKADLLSY* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0849 269 SMART serkin_6 55 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0849 269 Gene3D Transferase(Phosphotransferase) domain 1 131 268 - -
Psa1g0849 269 ProSiteProfiles Protein kinase domain profile. 55 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0849 269 Gene3D Phosphorylase Kinase; domain 1 18 130 - -
Psa1g0849 269 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 2 268 - -
Psa1g0849 269 SUPERFAMILY Protein kinase-like (PK-like) 43 255 IPR011009 -
Psa1g0849 269 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 2 268 - -
Psa1g0849 269 Pfam Protein kinase domain 56 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0849 269 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0849 Psa-Chr1 57275598 57279128 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0849 4 255 Receptor kinase-like Gene Family AT4G04570 54.724 7.77e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa1g0849 Pkinase 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0849 - - aprc:113868075 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0849 1 57275598 57279128 Psa1g0849 1 57275598 57279128 ECH