Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0835 ATGTACACATCTTGTGCACCTTTTAGATGCGGTGATTTTACTAATATTACCTATCCTTTCTGGAACCTTAACACACAATCTAGCTATTGTGGACACCCTGAGTTTATGGTTGATTGCCAAAATGGTAGATTGACTATGGAAATGATGTCCCAAAAGTTTTACATCCTTCATATAAATCAATCTTCTCAAGTTTTGAGGATTGCAAGAGACGATTTATGGGGTTTTCTTCCTGGTGATAAGCTCTCTTGTCCCAAACATTATATTAATGTGAAAATAGATTCTCATTTCTTCCATTACACTTCCAACAATGTTTTATGGGGTTTTCTTCCTGGTGATAAGCTCTCTTGTCCCAAACATTATATTAATGTGAAAATAGATTCTCATTTCTTCCATTACACTTCCAACAATGAAATGTATACTATATTGTATGAGTGTGGTTCTCTTCCAAATTCATACTTTTCTCCCTCGTTTCAAATTTCTTTTGAAGTAATGGATTGCTATATAGAGGGAAAATTCAATAGTGTATACATAGTATCAAATTCTAAATTGGCTGATTTTAGTGCGGTGAAGTGTGAGAATAGTATTGAAGTTCCTGGAAAATACAACTCTTTACCAAACAAATCAAGTGGTATGAAGGATATTTTAGTTGAAGGATTTGAGGTGAGATGGAATGGTGTGGAGGAAGACAGGTGCCATGCTTGTACAAAATATGGAGGGAGATGTGGATATAAAAGAGAAGAAAATGCATTTATGTGTCTCTCTAAGAGATCCGACACATCAAAAGTTCCATCAAGAACATGGAATTGGAAAAAGAAACTCATCGTTGGTGTTATTTCTACTGTGTTAGCAGCTCTTGCTGTCATCACATCCATTTACTTTTATGAGCGCCATAATATAAACTCTCGCAACCTCTCCTTACAACCATTTAGACTTGACAGTCAACGCATTAGCAAGAGTCAAAACTTTGGAGTCGAACACTTCATCTTTAAAGATCTTTACAAGGCTACAAACAACTTTGACAAAAAACTAGGAGATGGAGGCAGTGCAGAAGTTTTTTATGGCAAACTACTAGATAGGCGTGAAGTTGCAGTGAAAAGGTTTTTTAAATTCGGACTTAATAAAGAAAAACTATTTCTTAACGAAATAAATATACTAGCAAGAACTGTTCATCCAAATCTCGTCTTGTTACATGGTTGCACATCACTCAAAAGTCGTCGAGTTTTGGTCGTCTACGAGTATGTTCGTAATGGATCTTTGGATGATCATCTTCACGGTGACAAAGCAACACCTAATAATCTTCCTTGGAACATTAGGATGAGGATTGCCGTGGAGACAGCAGGTGCATTGAGCCATCTCCATGCTTCTAATATCGTTCATAGGGATATTAAAACTAATAATATTCTGTTAGATGCTGAATACCATGCTAAAGTAGCTGATTTTGGATTCTCGCGCCCTTTTCCTGATGATCAAAGTCGTGTTTTCACAAATCCACGAGGGACATCAGGCTATGTAGACCCCGAGTACAATGGAACTCATATACTTAGTTATAAAAGTGATGTGTTCAGTTTTGGAGTAGTGTTGATTGAGCTCATAACATCTTTGCGTGCTCATGATCGCAAGAGAAAGGATGATGAGGTCAACCTGTACGACATGGCTATTAACAGAATTCAAAATCAAACTTTGCATGGTATTGTGGATCATACCCTCGGTTTTGATACAGATTCCAAGGTAAGGCAAATGATTAATGGTGTTGCTGAGTTAGCATTTCGGTGTCTCCAAAGTTCCTGTGATATGAGACCGACAATGGAAGTTGTGCTCCAATGTTTAAAAAATCTCCAGGATGAGAATGAAGCGCCGGCAGTTCAAGTCCAAATGATGAAATAG 1884 0.3726 MYTSCAPFRCGDFTNITYPFWNLNTQSSYCGHPEFMVDCQNGRLTMEMMSQKFYILHINQSSQVLRIARDDLWGFLPGDKLSCPKHYINVKIDSHFFHYTSNNVLWGFLPGDKLSCPKHYINVKIDSHFFHYTSNNEMYTILYECGSLPNSYFSPSFQISFEVMDCYIEGKFNSVYIVSNSKLADFSAVKCENSIEVPGKYNSLPNKSSGMKDILVEGFEVRWNGVEEDRCHACTKYGGRCGYKREENAFMCLSKRSDTSKVPSRTWNWKKKLIVGVISTVLAALAVITSIYFYERHNINSRNLSLQPFRLDSQRISKSQNFGVEHFIFKDLYKATNNFDKKLGDGGSAEVFYGKLLDRREVAVKRFFKFGLNKEKLFLNEINILARTVHPNLVLLHGCTSLKSRRVLVVYEYVRNGSLDDHLHGDKATPNNLPWNIRMRIAVETAGALSHLHASNIVHRDIKTNNILLDAEYHAKVADFGFSRPFPDDQSRVFTNPRGTSGYVDPEYNGTHILSYKSDVFSFGVVLIELITSLRAHDRKRKDDEVNLYDMAINRIQNQTLHGIVDHTLGFDTDSKVRQMINGVAELAFRCLQSSCDMRPTMEVVLQCLKNLQDENEAPAVQVQMMK* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0835 627 SUPERFAMILY Protein kinase-like (PK-like) 318 609 IPR011009 -
Psa1g0835 627 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Psa1g0835 627 SMART serkin_6 337 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0835 627 ProSiteProfiles Protein kinase domain profile. 337 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0835 627 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 113 618 IPR044652 -
Psa1g0835 627 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 2 104 IPR044652 -
Psa1g0835 627 Pfam Wall-associated receptor kinase C-terminal 181 254 IPR032872 -
Psa1g0835 627 Pfam Wall-associated receptor kinase galacturonan-binding 5 69 IPR025287 GO:0030247
Psa1g0835 627 Gene3D Phosphorylase Kinase; domain 1 310 413 - -
Psa1g0835 627 Pfam Protein kinase domain 340 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0835 627 Gene3D Transferase(Phosphotransferase) domain 1 414 625 - -
Psa1g0835 627 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 113 618 - -
Psa1g0835 627 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 2 104 - -
Psa1g0835 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0835 Psa-Chr1 56022560 56024924 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0835 231 617 Receptor kinase-like Gene Family AT1G25390 45.038 3.26e-99 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Psa1g0835 Pkinase 7.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0835 - - gmx:100800873 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0835 1 56022560 56024924 Psa1g0835 1 56022560 56024924 ECH