Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0834 ATGGCGACTCCGTTAACGGGATTGCAGCAGCACTTAGACGCCGGCGGCGGAGGAGTTGCCGTGCTGTCGAATCTCGTTTCCTCTTCTTCTCCTTCTTCCACCTCCAATGGTGGCGGCGGATTCAACCGTTCCTCTTTATCAGAATCGCCAATTTTGATTTTCTCGTTCTTCCAAAAAGCGATTGGGAACGAGCTAGATGCGTTGCACCGATTAGCTATGGCGTTCGCTACCGGAAACTGCTCTGATATTCAACCTCTCTCCGAACGTTACCATTTCCTTAGATCGATGTATAGACACCATTCCAATGCTGAAGATGAGGTGATTTTTCCAGCTTTGGATAAGCGCGTGAAGAATGTAGCACAGACATATTCTCTTGAACATAAGGGTGAAAGCGATCTTTTTGACCATTTGTTTGAGCTGTTAAACTCTTCAGTTGATAACGATGAAACTTTCCGAAGGGAGCTAGCATCCTGCACAGGAGCTCTGCAGACATCTCTTAGTCAACACATGGCTAAGGAGCAACAGCAAGTGTTTCCGCTGCTTATTGAGAAGTTCTCAGTGGAGGAACAGGCATCTTTAGTTTGGCAGTTTCTTTGCAGTATTCCAGTGAATATGATGGCAGAATTTCTTCCATGGCTTTCAACATCCATCTCACCTGATGAATCTCAGGATTTACGGAAGTGCTTAAGCAAGATAGTGCCAGAGGAAAAGCTTCTTCAAAAGGTTATCTTCACCTGGATGGAAGGGCGAAGTAGTGCTAACACAGCTGAAAATTGTGTAGATCATTCTCAGGTTCAATGTAGTGCTTGTCCTTTAGCCAATCAGATTGAGAAAATAAAATGTGCATGCGAGTCCACTGTATCTGGGAAAAGAAAATATTCTGCATCTATTCTAGATGTTCCAGAGACAATGGGTTCACATCCTATAGATGAAATATTGCTATGGCATAATGCTATAAAAAAAGAATTAAATGAGATAGCAGTGGAGACCAGAAAGATACAACACTCTGGAGATTATACCAATCTGTCTGCTTTTAATGAAAGATTGCAGTTCATTGCTGAAGTTTTCATATTTCACAGTATTGCTGAGGACAAGGTTATTTTTCCGGCAGTGGATGGGGATTTTTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTCCGATCTTTGATTGAAAGAATTCTAAGTGAAGAAGCAACATCTAGTTCAGAAGTTGAACTCTATTCCAAGTTGTGCTCGCATGCTGATCATATAATGGAAACCATACAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCACGGAAGCACTTTAGCTTCAAAAGGCAACGTGAACTAGTGTATGAAAGCTTGTGCATGATGCCTCTAAAGTTGATTGAGCGTGTCCTACCATGGTTTGTTGGATCATTAACTGAAGATGAAGCAGAGATATTTCTGAAAAACATACAATCGGCAGCTCCAGCAATAGATTCTGCTTTAGTCACTCTCTTCTCTGGTTGGGCTTGCAAGGCTCGTAAAAATGGTCAGTGCTTGTCTTCAAGTGCATCACGTTTCTGTCCTGCTAAAAAAATTGGTCGGTCTTCCTGTGCTTGTGCATTGTCTGGTAAAGATTGCTCAGTGTTAGCTGAATCGGAAGGGACCCAAAGATCAGTGAAGAGAAGCATATTGGAGCTGCACAAAAATGGAGATGTCTCAAAAACAACAGAAAATGAATGTGCCCAGAAACCATGTTGTGGTGCCCGGTCTTGTTGTGTGCCAGCATTAGGAGTCAGCGGCAACAATTTGGGGCTGAGTTCACTTTCTGCTGCCAAGTCCTTACGGAGCTTCACTTCTTCCGCCCCATCTCTTAATTCCAGTCTTTTCATATGGGAAACAGACAGCAGCTCATGTGATATGGGCTCTGCAGAAAGACCAATTGATACCATCTTTAAATTCCATAAGGCTATACGCATAGATTTGGAGTATTTAGATGTAGAATCTGGAAAGCTTTGTGATGGTGATGGAGCAACTATTCGACAATTTACTGGAAGATTCCGTCTTTTATGGGGTTTATACAGAGCTCATAGTAATGCTGAAGATGATATAGTTTTCCCCGCATTGGAATCCAAAGAGACACTTCATAACGTGAGCCATTCTTACACATTAGATCATAAGGCGGAAGAGAAGTTATTTGAAGATATTTCTTGTGTTCTCTCCGAGCTTTCTGTCCTTCATGAAGCATTGCAAAGGACCCATATGTCAGAGGATTTAAGTGAAAGTAATTTGGGAATATCTGAAGTCAATGATAGTGATGATATCAGAAAGTACAATGAGCTTGCAACTAAGCTTCAAGGAATGTGTAAATCTATACGAGTGACCCTGGATCAGCATATTTTCAGGGAAGAGCTTGAACTCTGGCCGTTGTTTGGGAAGCATTTCACTGTGGAAGAACAAGACAAGATAGTGGGCCGAATAATTGGAACTACAGGGGCCGAAGTTCTCCAATCAATGTTACCGTGGGTGACTTCTGCACTAACACAAGATGAACAGAACCAAATGATGGACACATGGAAACAAGCAGCTAAGAATACAATGTTCAATGAATGGCTAACTGAATGCTTGATAGAGAGTCCAGGATCTACATCACAGACAGAAACATCAGAACATAGCACTTCTCAAAGAGGTGCTGAATATCAAGAAAGCTTGAACCTGAATGATCAGATGTTTAAGCCGGGTTGGAAAGACATATTCCGGATGAATCAGAATGAACTTGAGTCAGAAATCCGGAAAGTTTATCGCGACTCAACCCTTGACCCAAGGAGAAAGGCATATCTAGTGCAGAATCTGATGACAAGTCGCTGGATAGCTGCCCAACAGAAGTTACCTAAATCTCAATCTGGGGAATCATCTAATAAACAAATAGAAGGGTGTGTACCTTCATTTCGGGACCCAGAGAAACAAGTATTTGGTTGTGAGCACTATAAGAGAAATTGCAAAGTTCGAGCTGCTTGTTGTGGGAAGTTATTTACATGCAGATTTTGTCATGACAACAATTCAAGTGATCACTCAATGGATAGAAAAGCAACATTGGAAATGATGTGTATGGCCTGCATGACTATACAGCCAGTTGGGCCCATATGCACAACCCCTTCTTGTAATGGACTTTCAATGGCAAAATACTACTGTAACATTTGCAAATTTTTTGATGATGAAAGGAATGTTTACCATTGCCCATTTTGCAATATATGCCGTGTTGGACAAGGGCTTGGGATTGATTACTTTCATTGTATGAAATGCAATTGTTGCGTGGGGATAAAATCAGTGTCTCACAAGTGCCTGGAGAAAGGCTTAGAAATGAACTGCCCAATTTGCTGTGACGACTTGTTCACATCAAGTGCAACGGTCAGAGCTCTTGCTTGTGGGCATTACATGCATTCATCTTGCTTTCAGGCATACACTTGCAGTCACTACACATGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTTGACGCGCTGTTGGCTGCTGAGCAGCTTCCTGAAGAGTACAGGGACCGCTCTCAGGACATACTCTGCCATGACTGTGATAGAAAGGGAATCTCACACTTCCACTGGTTATATCATAAATGTGGATTTTGTGGTTCATATAATACTCGGGTGATCAAGAGTGAGACAACAAATTCCAGCTGCCCTTGA 3714 0.4211 MATPLTGLQQHLDAGGGGVAVLSNLVSSSSPSSTSNGGGGFNRSSLSESPILIFSFFQKAIGNELDALHRLAMAFATGNCSDIQPLSERYHFLRSMYRHHSNAEDEVIFPALDKRVKNVAQTYSLEHKGESDLFDHLFELLNSSVDNDETFRRELASCTGALQTSLSQHMAKEQQQVFPLLIEKFSVEEQASLVWQFLCSIPVNMMAEFLPWLSTSISPDESQDLRKCLSKIVPEEKLLQKVIFTWMEGRSSANTAENCVDHSQVQCSACPLANQIEKIKCACESTVSGKRKYSASILDVPETMGSHPIDEILLWHNAIKKELNEIAVETRKIQHSGDYTNLSAFNERLQFIAEVFIFHSIAEDKVIFPAVDGDFSFFQEHAEEESQFNDFRSLIERILSEEATSSSEVELYSKLCSHADHIMETIQRHFHNEEVQVLPLARKHFSFKRQRELVYESLCMMPLKLIERVLPWFVGSLTEDEAEIFLKNIQSAAPAIDSALVTLFSGWACKARKNGQCLSSSASRFCPAKKIGRSSCACALSGKDCSVLAESEGTQRSVKRSILELHKNGDVSKTTENECAQKPCCGARSCCVPALGVSGNNLGLSSLSAAKSLRSFTSSAPSLNSSLFIWETDSSSCDMGSAERPIDTIFKFHKAIRIDLEYLDVESGKLCDGDGATIRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKAEEKLFEDISCVLSELSVLHEALQRTHMSEDLSESNLGISEVNDSDDIRKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNQMMDTWKQAAKNTMFNEWLTECLIESPGSTSQTETSEHSTSQRGAEYQESLNLNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKSQSGESSNKQIEGCVPSFRDPEKQVFGCEHYKRNCKVRAACCGKLFTCRFCHDNNSSDHSMDRKATLEMMCMACMTIQPVGPICTTPSCNGLSMAKYYCNICKFFDDERNVYHCPFCNICRVGQGLGIDYFHCMKCNCCVGIKSVSHKCLEKGLEMNCPICCDDLFTSSATVRALACGHYMHSSCFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEQLPEEYRDRSQDILCHDCDRKGISHFHWLYHKCGFCGSYNTRVIKSETTNSSCP* 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0834 1237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1115 1165 IPR013083 -
Psa1g0834 1237 Pfam Hemerythrin HHE cation binding domain 307 441 IPR012312 -
Psa1g0834 1237 Pfam Hemerythrin HHE cation binding domain 645 808 IPR012312 -
Psa1g0834 1237 Pfam Hemerythrin HHE cation binding domain 60 181 IPR012312 -
Psa1g0834 1237 Pfam Zinc-ribbon 1168 1225 IPR039512 -
Psa1g0834 1237 CDD RING-H2_Pirh2 1120 1163 - -
Psa1g0834 1237 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 31 1237 - -
Psa1g0834 1237 SUPERFAMILY CHY zinc finger-like 984 1048 IPR037274 GO:0008270
Psa1g0834 1237 SUPERFAMILY Zinc hairpin stack 1058 1113 IPR037275 -
Psa1g0834 1237 MobiDBLite consensus disorder prediction 878 898 - -
Psa1g0834 1237 CDD Hr-like 310 439 - -
Psa1g0834 1237 Gene3D - 1192 1234 - -
Psa1g0834 1237 Pfam Ring finger domain 1120 1162 IPR001841 -
Psa1g0834 1237 CDD Hr-like 647 807 - -
Psa1g0834 1237 ProSiteProfiles Zinc finger CHY-type profile. 984 1054 IPR008913 GO:0008270
Psa1g0834 1237 SMART ring_2 1121 1162 IPR001841 -
Psa1g0834 1237 SUPERFAMILY RING/U-box 1118 1173 - -
Psa1g0834 1237 CDD Hr-like 53 179 - -
Psa1g0834 1237 Gene3D nmb1532 protein domain like 641 878 - -
Psa1g0834 1237 PANTHER CHY ZINC FINGER PROTEIN 31 1237 - -
Psa1g0834 1237 Gene3D nmb1532 protein domain like 310 458 - -
Psa1g0834 1237 Gene3D nmb1532 protein domain like 49 199 - -
Psa1g0834 1237 ProSiteProfiles Zinc finger RING-type profile. 1121 1163 IPR001841 -
Psa1g0834 1237 ProSiteProfiles Zinc finger CTCHY-type profile. 1057 1120 IPR017921 -
Psa1g0834 1237 Pfam CHY zinc finger 991 1067 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0834 Psa-Chr1 55724162 55733840 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0834 1 1236 C2H2 Transcription Factor Family AT3G18290 66.404 0.0 1675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0834 K16276 - gmx:100791354 2136.69