Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0833 ATGAACAAATACTCTTCTCAGATATCATTAACTTTTTATTTCATCAACACTTTTCTTTTATTCCCCCTACTCTTGAGCCAATTCTATGGTACCGCAGATGAGATGTACACATCTTGTGAACCTTTTAACTGCGGTAATTTCGTTAATATAACTTATCCATTCTGGAACTATAACACCCAACCTAGCTATTGTGGACACCCTAAGTTTATGCTTGACTGCCAAGATGGAAGCTTGACTATGGAAATCAAATACCAAAAGTTTCACATCCTTCGTATAGATCAAGCCTCTCAAATTTTGAGGATTGCAAGGGAAGATATTTGGGATTTTATTTCAGGGGATATAGAGCTTTGTCCCAAACATTATACTAACGTGGATATAGATTTTCATTTCTTCAATTACACTTCCAACAATAAAATGTATATTATGTTGTACGAGTGTGGTCCTCTTCCAGATTCATACTATTCTCCCTCGAATCAAGATAATTTTGAAGTAACGTCTTGTGATATAGAAGGAAAAATTCAAATTATATACATAGTATCAAGTGCCAAATTGACTGATTTTAGTGTCATGAAGTGTAAGAATAGTATCACGGTTCCCGGAAAAACGAATTCTTTGAAAAACAATTCAGGAGTTGCAAAGAGTGTTTTAGATGACGGATTCGAAGTGAGATGGAATGGTGTGGGAGATGACACCTGTCATAATTGCATAAAACATGGAGGGAGATGTGGATACAAAAGGGCAGAAAATGCAGTTATGTGTCTCTCAAAGGATCCAAAAGGAAAATGGAATTGGAAAATGAAACTCACTGCTGGTGTTATTTCTTCTGTGTTGGCAACACTTGTTATCCTCGCATCCATATATATTTATAGGCGCCGCAGTAATAATAGTCATGTTGAGTCCTATATACAGTCTCCTAGCATCTCCTTGCAACCATCTAAACGGATTAGCAAAAGTAAAAACTTTGGAGTCGAGCATTTCGTCTTTGAAGATCTTGATGTGGCCACAGAGTATTTCAGCATTGACAACAGACTAGGAGATGGAGGCAGTGCAGAAGTATTTTATGGAAAACTACTAGATGGGCGTCAAGTGGCGGTGAAAAGACTTTTTGAATACAGCATAAATAAAGAGAAACAATTTCTCAACGAAGTAGAAATACTAGCCAGGGTTGTGCATCCCAATCTCGTGTTGTTATATGGTTGCACATCACTAATAAGCCGTGAAGCTATGATTGTCTACGAGTATGTTTCTAATGGAAGTTTGTATGATCATCTTCATGGTAACAAAGCAACATCTGAGAAACTTCCTTGGAATATTAGGATGAGGATTGCTGTGGAGACTGCAGATGCATTGAATTATCTTCATGCTTCTAATATCGTCCACAGAGATATTAAATCGAGTAATATTCTTTTAAATGCCGAATGTCATGTCAAAGTAGCAGATTTTGGACTCTCCCGCATCTTTCCAATTGATAAAAGTCGTGTTTTAACAACTCCAAAAGGGACTTCAGGCTATTTAGATCCCGAGTACAATAAAACTCAGGAGCTTACTTATAAAAGTGATGTCTTTAGTTTTGGAGTGGTGCTGATAGAGCTAATAACATGTTTGCGTGCTTATGATATCAGCAGAAAGAAGGAGGATGTGGTTCTGTACGAAATGGCTATGAACAAATTTCAAAATCAAACTTTGACTGACATTATGGATCATACCCTCGATTTTAATTCAGATTCCAAAGAAAATCAAATGATTAATGGTGTTGCCGAGTTAGCATTTCGGTGTCTTCAAATTTCTAGTCATATGAGACCAACTATGGAAGATGTGCTCCAAAACTTAGTGAATATTCAAGGTGTGAATGAGATCCAACCCGAAGCAGCTAGTAGTTCTAACCCTGATGGTGAAATAAAGTTAGTTAATAATGCTAGTAGTTCTACAAAGCAGAAAAACGCTAGTGTTTAG 1953 0.3687 MNKYSSQISLTFYFINTFLLFPLLLSQFYGTADEMYTSCEPFNCGNFVNITYPFWNYNTQPSYCGHPKFMLDCQDGSLTMEIKYQKFHILRIDQASQILRIAREDIWDFISGDIELCPKHYTNVDIDFHFFNYTSNNKMYIMLYECGPLPDSYYSPSNQDNFEVTSCDIEGKIQIIYIVSSAKLTDFSVMKCKNSITVPGKTNSLKNNSGVAKSVLDDGFEVRWNGVGDDTCHNCIKHGGRCGYKRAENAVMCLSKDPKGKWNWKMKLTAGVISSVLATLVILASIYIYRRRSNNSHVESYIQSPSISLQPSKRISKSKNFGVEHFVFEDLDVATEYFSIDNRLGDGGSAEVFYGKLLDGRQVAVKRLFEYSINKEKQFLNEVEILARVVHPNLVLLYGCTSLISREAMIVYEYVSNGSLYDHLHGNKATSEKLPWNIRMRIAVETADALNYLHASNIVHRDIKSSNILLNAECHVKVADFGLSRIFPIDKSRVLTTPKGTSGYLDPEYNKTQELTYKSDVFSFGVVLIELITCLRAYDISRKKEDVVLYEMAMNKFQNQTLTDIMDHTLDFNSDSKENQMINGVAELAFRCLQISSHMRPTMEDVLQNLVNIQGVNEIQPEAASSSNPDGEIKLVNNASSSTKQKNASV* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0833 650 Pfam Protein kinase domain 339 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0833 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Psa1g0833 650 Pfam Wall-associated receptor kinase galacturonan-binding 39 103 IPR025287 GO:0030247
Psa1g0833 650 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 13 640 - -
Psa1g0833 650 Pfam Wall-associated receptor kinase C-terminal 186 257 IPR032872 -
Psa1g0833 650 SUPERFAMILY Protein kinase-like (PK-like) 319 610 IPR011009 -
Psa1g0833 650 Gene3D Phosphorylase Kinase; domain 1 310 414 - -
Psa1g0833 650 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Psa1g0833 650 Gene3D Transferase(Phosphotransferase) domain 1 415 624 - -
Psa1g0833 650 MobiDBLite consensus disorder prediction 622 650 - -
Psa1g0833 650 SMART serkin_6 338 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0833 650 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 13 640 IPR044652 -
Psa1g0833 650 ProSiteProfiles Protein kinase domain profile. 338 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0833 Psa-Chr1 55701112 55703437 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0833 37 638 Receptor kinase-like Gene Family AT1G25390 35.209 1.71e-105 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Psa1g0833 Pkinase 4.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0833 - - cit:102609569 471.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0833 1 55701112 55703437 Psa1g0833 1 55701112 55703437 ECH