Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0829 ATGACTCCACATTTTTTTCTTTCTCATTTTTCCTATATCGTCAACTTAGTTCTCTTTCTTGCATTCTTCTTCTTAATCCCAATACATGTCAATTGTGATGCTAAGAGCTACAAATCATGTGCACCTTTTACCTGTGGAAGTTTCACCAACATCACTTATCCATTTTGGAATATGAACAGTCAACCAAATTATTGTGGTCATCCAAACTTCACGCTTGATTGCCAGAAAAACAACTTGACTATTGACATCAACTCACAAAAGTTTCATATCATTGATATGAATCAAACAACACAACTTTTGAAGATTGCAAGGTTGGATTTATGGAATTATGATGCTGCAAATGTTCCTTCTTGTCCTGATACCAATGTAAAATTGAATCTGGGTTTCTTCAAGTACACTTCCAATGATGAGAGCTATACTCTATTGTCCGGATGTGACCCTCTTCCTACTGTTTCATTCGGATCTCCTTTGATTTCAGAAGTTTCTCAAAAGATTTCTTGCCTCATAGATAGTGAACCTCAAGATGCATACTTAATACTAAGTACTAAAATGGCGGATTTCACAGGCCTAGAGTGTAAGAACAATATCAAAGTTTATGGACCAAAAAGCTCTATCATAGAAAATTCCGATACAACGGTGAATGTTTTAAAGGACGGATTTGAGGTTGGGTGGAGTGGTGTGCATGACGATATATGTAACTATTGCAAGAAATTTGGTGGGAGATGTGGATACAATACATCTAAAAGTGCAATTATGTGTATTTGTCCTAATCAACAATCTTATGGCGATTGTGGATTTTGTCGCGACAACTCAACAACTGAGATTTGGCCGGATGAGTCGGGTTGCACAGGATCCAAGCTGTATAAGTCTGTGGCACCATCATCTCTAGCAGAACCATCATATGGATTACAACAGCCATATGGAGATACACCATTTCAAGCATTAGTACCATCTTCTAATTCAGATTCAAAAAAGTCTCGGCACACTTCAAGCTCGTTTTTGAAGAGGAAACTCATTTTTGGTGTTGTTGGAGGTGTAGTAATAGTAGCGTTGCTGATGTGCATCACAATTTGTTATATTAGAGGTAAGTCATCAATACAACAAGTAAAATTATGGTTTAAGACAAAGAATGATAAAAACATCGAAGCATTTTTTAAAGAACATGGAGCTTTAACCCAAAAGAAATACAAATTTTCAGAAATAAAAAAAATGACAAATTCATTCAAAGTTAAACTTGGTCAAGGGGGTTTTGGTGTTGTGTACAAAGGAAATTTACTCAATGGTTGTCCTGTGGCAGTGAAGATATTGAATGCAACAAAAAGAAATGATGAGGAATTTATTAATGAAGTTGCAAGTATTACTAGAACCTCACATGTTAATGTTGTCACTCTTCTTGGATTTTGTTTTGAAGGGTATAAAAAAGCGCTTGTATATGAATTTATGTCTAACGGTTCTCTTGACAAATTTATTTACAATAAAGGATCTGAAACTATTGAATCTTTAAGTTGGGATAATTTGCATCATGTTGCGAAAGGAATAGCTCGTGGGCTAGAGTATTTGCATAGAGGATGCACCACTCGAATTTTACATTTTGACATAAAACCACATAACATTCTTTTGGATGAGAACTTTAATCCAAAGATTTCCGATTTTGGACTTGCAAAGCTTTGCCTTAGAAAAGAGAGCATTATTTCGATGTCAGATCAAAGAGGGACGATGGGATATGTAGCTCCAGAAGTATGGAATAGACATTTTGGAGGAGTTTCACATAAGTCGGATGTTTATAGTTATGGAATGATGTTGTTAGAAATGGTGGGTGGAAGGAAAAATATTAATGCTGATGCAAGTCACACAAGTGAGATATACTTTCCTCATTGGGTATATAGTAGACTTGAGTTTGGAAGTGATTTGAGACCTAATGGAGTAATGGATACGAAAGAAGATGAGATTGCAAGGAGAATGACCATTGTGGGTATGTGGTGTATTCAAACATTTCCTAATGATAGGCCTACAATGAGTAAAGTAGTTGAAATGTTAGAAGTTAGCATGAATTCATTGCAAATACCACCAAAACCATTACTTTCGTCTCCTACTAGATCAATATCAGAGTCTTAA 2115 0.3565 MTPHFFLSHFSYIVNLVLFLAFFFLIPIHVNCDAKSYKSCAPFTCGSFTNITYPFWNMNSQPNYCGHPNFTLDCQKNNLTIDINSQKFHIIDMNQTTQLLKIARLDLWNYDAANVPSCPDTNVKLNLGFFKYTSNDESYTLLSGCDPLPTVSFGSPLISEVSQKISCLIDSEPQDAYLILSTKMADFTGLECKNNIKVYGPKSSIIENSDTTVNVLKDGFEVGWSGVHDDICNYCKKFGGRCGYNTSKSAIMCICPNQQSYGDCGFCRDNSTTEIWPDESGCTGSKLYKSVAPSSLAEPSYGLQQPYGDTPFQALVPSSNSDSKKSRHTSSSFLKRKLIFGVVGGVVIVALLMCITICYIRGKSSIQQVKLWFKTKNDKNIEAFFKEHGALTQKKYKFSEIKKMTNSFKVKLGQGGFGVVYKGNLLNGCPVAVKILNATKRNDEEFINEVASITRTSHVNVVTLLGFCFEGYKKALVYEFMSNGSLDKFIYNKGSETIESLSWDNLHHVAKGIARGLEYLHRGCTTRILHFDIKPHNILLDENFNPKISDFGLAKLCLRKESIISMSDQRGTMGYVAPEVWNRHFGGVSHKSDVYSYGMMLLEMVGGRKNINADASHTSEIYFPHWVYSRLEFGSDLRPNGVMDTKEDEIARRMTIVGMWCIQTFPNDRPTMSKVVEMLEVSMNSLQIPPKPLLSSPTRSISES* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0829 704 Pfam Wall-associated receptor kinase galacturonan-binding 40 103 IPR025287 GO:0030247
Psa1g0829 704 Gene3D Phosphorylase Kinase; domain 1 367 480 - -
Psa1g0829 704 SMART serkin_6 406 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0829 704 Pfam Protein kinase domain 409 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0829 704 SUPERFAMILY Protein kinase-like (PK-like) 393 681 IPR011009 -
Psa1g0829 704 ProSiteProfiles Protein kinase domain profile. 406 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0829 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 528 540 IPR008271 GO:0004672|GO:0006468
Psa1g0829 704 ProSitePatterns Protein kinases ATP-binding region signature. 412 434 IPR017441 GO:0005524
Psa1g0829 704 PANTHER RUST RESISTANCE KINASE LR10-RELATED 330 704 IPR045874 GO:0004672
Psa1g0829 704 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 330 704 - -
Psa1g0829 704 Gene3D Transferase(Phosphotransferase) domain 1 481 688 - -
Psa1g0829 704 Pfam Wall-associated receptor kinase C-terminal 190 257 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0829 Psa-Chr1 54598092 54615207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0829 22 704 Receptor kinase-like Gene Family AT1G66910 35.955 2.16e-136 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Psa1g0829 Pkinase 2.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0829 - - gmx:102665158 781.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0829 1 54598092 54615207 Psa1g0829 1 54598092 54615207 ECH