Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0828 ATGTCTCCATCTTTTCTTCAACCCCATTCTTCCTTCCTCATCAACATCCTTCTCTTCCTCTCACTCTTCCTAGTCCCAATACATGTCAATAGTGATGCTAAGAGCTACAAATCATGTGCACCTTTTACATGTGGAAGTTTCACCAACATCACTTATCCATTTTGGAATATGAACAGTCAACCAAATTATTGTGGTCATCCAAACTTCACGCTTGATTGCCAGAAAAACAACTTGACTATTGACATCAACTCACAAAAGTTTCATATCATTGATATGAATCAAGCATCACAGGTTTTGAAGATTGCAAGGTTGGATTTATGGAATTATGATGCTGCAAATGTTCCTTCTTGTCCTGATACCAATGTAAAATTGAATCTGGGTTTCTTCAAGTACACTTCCAATGATGAGAGCTATACTCTATTGTCCGGATGTGACCCTCTTCCTACCAATACATACGGGCCGCCTCTGATTTCAGAAGTTTCTCAAAAGTTTTCTTGCCTCATAGATAGTGAACCTCAAGATGCATACTTAATACTAAGTACTAAAATGGCGGATTTCACGGGCCTAGAGTGTAAGAACAATATCAAAGTTTATGGACCAAAAAGCTCTATCATAGATGATTCCGGTACAACGGTGAATGTTTTAAAGGACGGATTTGAGGTTGGGTGGAGTGGTGTGGACGACGATATATGTAACTATTGCAAGAAATTTGGTGGGAGATGTGGATACAATACAACCAAAAGTGCATTTATGTGTATTTGTCCTAATCAACAATCTTATGGTGATTGCGGATTTTGTCGCGACAATTCAACGACTGATATTTGGCCGGATGAGTCGGGTTGCATAGGATCCAAGTTGTATAAACCTGTGGCGCCATCCCCTCTAGCAGAACCATCATATGGATTACAACAGCCATATGGAAATACACCATTTCAAGCATTAGAACCATCTTCTAATCCAGATTCAAAAAAGCCTGACACTTCGCGTAAATTGAATCTGAGGAGGAAAATCCTCATTGCTGTTGCTTCTTCTGTGTTTGGAGCATTTGCAGTTATAGTAGCCATCTATTTCTATAGGCGCAGGAAGAATAAAACTTATGCAAAGTCATATCTACAGTCTCGTAGCCTCTCTTCTGAGCTCACTTCAAAGGATCCTGAGAATGGAAGTCAATACTTCGGAAGAAGTCAAAACTTTGGAGTGCAACATTTTACTTATAGTGAACTTGAAGAAGCCACAAACTACTTTGATCCATCCAAAGAACTAGGAGAAGGAGGCTTTGGAACGGTGTATTACGGAAAACTGTATGACGGGCGAAGTGTTGCGGTGAAGAGGTTATATGAGAACAATTACAAAAGAGTTGAGCAATTCAAGAATGAAGTTGAAATCTTGGCATCCTTGGTCCATCCAAATCTTGTGTCTCTATACGGATGTACTTCACGCCACAGTCGCGAACTCCTACTTGTCTACGAGTATGTTTCTAATGGAACTGTCGCTGATCATCTCCGTGGTAAACACGCGAAACAAGGAAAACTTACTTGGCCTATTAGAATGAATATTGCCGTGGAGACAGCAAGTGCGTTGAAGTATCTTCATATTTCGGAAATCATTCACAGAGACATAAAAACAAATAATATTCTTCTCGACGCTCATTTTCATGTCAAGGTAGCGGATTTTGGACTCTCGCGCCTTTTTCCATACGATCAAACTCATGTTTCAACGGCTCCACAAGGGACTCCGGGTTATGTGGATCCTGAGTACCATCAGTGCTACCAACTTACGGATAAAAGTGATGTCTATAGCTTTGGAGTTGTGATGATTGAGCTGATATCATCTTTGCCTGCTGTTGATATAACAAGACATAGGCATGAAATCAATTTGGCTAGCATGGCACTCAACAGAATTCAAAACCAAGCATTGCATGAAATTGTGGATCCTACGCTCGGTTTTGAATCAGATGCTAAGGTAAAGAAAATGATAGTTGCCATGGGCGAGTTAGCGTTTCAATGTTTGCAAAGTTCCAAAGATATGAGACCTACCATGGATGAAGTGTTGGAAAGCTTAAAGGTTATTCAAAATGGCGGTAAGCATAAAAACCAACCCGAGGTAATGGACATTTCCAGTTTATCTGATGATGCTGTGCTGCTGAATCATGCTCCACCTCCACTATCACCTGATTCGAATGTTCGGAGCAATTATACAACACCGAATACTAGTGGATAA 2220 0.4032 MSPSFLQPHSSFLINILLFLSLFLVPIHVNSDAKSYKSCAPFTCGSFTNITYPFWNMNSQPNYCGHPNFTLDCQKNNLTIDINSQKFHIIDMNQASQVLKIARLDLWNYDAANVPSCPDTNVKLNLGFFKYTSNDESYTLLSGCDPLPTNTYGPPLISEVSQKFSCLIDSEPQDAYLILSTKMADFTGLECKNNIKVYGPKSSIIDDSGTTVNVLKDGFEVGWSGVDDDICNYCKKFGGRCGYNTTKSAFMCICPNQQSYGDCGFCRDNSTTDIWPDESGCIGSKLYKPVAPSPLAEPSYGLQQPYGNTPFQALEPSSNPDSKKPDTSRKLNLRRKILIAVASSVFGAFAVIVAIYFYRRRKNKTYAKSYLQSRSLSSELTSKDPENGSQYFGRSQNFGVQHFTYSELEEATNYFDPSKELGEGGFGTVYYGKLYDGRSVAVKRLYENNYKRVEQFKNEVEILASLVHPNLVSLYGCTSRHSRELLLVYEYVSNGTVADHLRGKHAKQGKLTWPIRMNIAVETASALKYLHISEIIHRDIKTNNILLDAHFHVKVADFGLSRLFPYDQTHVSTAPQGTPGYVDPEYHQCYQLTDKSDVYSFGVVMIELISSLPAVDITRHRHEINLASMALNRIQNQALHEIVDPTLGFESDAKVKKMIVAMGELAFQCLQSSKDMRPTMDEVLESLKVIQNGGKHKNQPEVMDISSLSDDAVLLNHAPPPLSPDSNVRSNYTTPNTSG* 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0828 739 SMART serkin_6 415 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0828 739 MobiDBLite consensus disorder prediction 717 739 - -
Psa1g0828 739 Gene3D Transferase(Phosphotransferase) domain 1 492 702 - -
Psa1g0828 739 ProSiteProfiles Protein kinase domain profile. 415 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0828 739 CDD STKc_IRAK 421 688 - -
Psa1g0828 739 ProSitePatterns Serine/Threonine protein kinases active-site signature. 535 547 IPR008271 GO:0004672|GO:0006468
Psa1g0828 739 Pfam Wall-associated receptor kinase C-terminal 189 256 IPR032872 -
Psa1g0828 739 MobiDBLite consensus disorder prediction 723 739 - -
Psa1g0828 739 Pfam Protein kinase domain 418 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0828 739 ProSitePatterns Protein kinases ATP-binding region signature. 421 443 IPR017441 GO:0005524
Psa1g0828 739 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 13 728 - -
Psa1g0828 739 Pfam Wall-associated receptor kinase galacturonan-binding 39 102 IPR025287 GO:0030247
Psa1g0828 739 SUPERFAMILY Protein kinase-like (PK-like) 394 689 IPR011009 -
Psa1g0828 739 Gene3D Phosphorylase Kinase; domain 1 390 491 - -
Psa1g0828 739 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 13 728 IPR044652 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0828 Psa-Chr1 54537837 54546882 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0828 337 739 Receptor kinase-like Gene Family AT1G25390 56.763 6.20e-140 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Psa1g0828 Pkinase 1.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0828 - - cam:101492618 1061.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0828 1 54537837 54546882 Psa1g0828 1 54537837 54546882 ECH