Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0816 ATGATTGTCTACGAGTATGTTTCAAATGGAAGTTTGTATGACCATCTTCATGGTAACAAAGCAACATCTGAAAAACTTCCTTGGAATATTAGGATGAGGATTGCTGTGGAGACTGCAGATGCATTGAAGTATCTTCATGCTTCTACTATCGTCCACATAGATATTAAATCGAGTAATATTCTTTTAAATGCCGAATGTCATGTCAAAGTAGCAGATTTTGGACTCTCCCGCATCTTTCCAATTAATAAAAGTCGTGTTTTAACAACTCCACAAGGGACCTCCGGCTGTTTAGATCCCGAGTACAAAAAAACTGAGGAGCTTACTTATAAAAGTGATGTCTTTAGTTTTGGAGTGGTACTGATAGAGCTAATAACATGTTTGCGTGCTTATGATATCAGCAGAAAGGAGGAAGATGTCGTTCTGTACGAAATGGCTATGAAAAAATTTCAAAATCAAACTTTGACTGATATTGTGGATCATACCCTCGATTTTAATTCAGATTCCAAAGAAAATCAAATGATTAATGGTGTTGCCGAGTTAGCATTTCGGTGTCTCCAAATTTCTAGTGATATGAGACCAACCATGGAAGATGTGCTCGAAAACTTACTGAATATTCAAGGGCTGAATGAGATCCAAGCAGAAGCAGGTAGTAGTTCTAATCCTAATGATGAAATAAAGTTACTTAATAATGATCAAGCTTCACTATTCCCTAGTTAA 717 0.364 MIVYEYVSNGSLYDHLHGNKATSEKLPWNIRMRIAVETADALKYLHASTIVHIDIKSSNILLNAECHVKVADFGLSRIFPINKSRVLTTPQGTSGCLDPEYKKTEELTYKSDVFSFGVVLIELITCLRAYDISRKEEDVVLYEMAMKKFQNQTLTDIVDHTLDFNSDSKENQMINGVAELAFRCLQISSDMRPTMEDVLENLLNIQGLNEIQAEAGSSSNPNDEIKLLNNDQASLFPS* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0816 238 SMART serkin_6 2 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0816 238 ProSitePatterns Serine/Threonine protein kinases active-site signature. 50 62 IPR008271 GO:0004672|GO:0006468
Psa1g0816 238 PIRSF ILK 1 215 - -
Psa1g0816 238 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 2 233 IPR044652 -
Psa1g0816 238 ProSiteProfiles Protein kinase domain profile. 1 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0816 238 Pfam Protein kinase domain 2 200 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0816 238 SUPERFAMILY Protein kinase-like (PK-like) 1 202 IPR011009 -
Psa1g0816 238 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 2 233 - -
Psa1g0816 238 Gene3D Transferase(Phosphotransferase) domain 1 7 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0816 Psa-Chr1 52590640 52593088 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0816 1 206 Receptor kinase-like Gene Family AT1G25390 48.792 1.69e-62 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Psa1g0816 Pkinase 1.6e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0816 - - mtr:MTR_6g083020 257.299