Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0813 ATGATGCAGACTGTGTATGTAGTCTCAAATTCTAAATTGTTTGATTTTGTTACCATGAATTGTAAAAATAGAATCACAATTCCTGGAATAAAAAACACTTCTACCAATTCCTCGGATGCCGTGATGAGATTTTTAAAGAAAGGATTTGAAGTTAGGTGGAGCGGGGTGGGGGAAGAAAAATGTCGCGCTTGCATGAGATCAGGTGCGACATGTGGCTTTGACAAATCAAAAATTGAAGTTACATGTCTCTTCAAGAGATCTGCGACAACCAAAGGAGAACTACTTGATGGTCGACGCATTGCGGTTAAAAAGATTCGTGACAACGACAGACTTGATCAATTCCTGAATGAGCCTGAAACCCTATCATATCTATCTCATCCTAATCTGGTATCTTTATATGGATGTATATCTTCAAGAGGTCCTGATCTTATGCTTGTATATGAATATGTTTCAAATGGAACTGTATATGAACATCTTCATGGTGACAGAGAAACACATGAAAATCTACCGTGGAGCACAAGAATGAATATTACGGTGGAAACAGCTAGTGCATTGAAGTATCTTCATGCTTCTAATATTATCCATAGGGATATCAAAACTAACAATATTCTTCTTGATGCTAATTTTCATGTTAAATTAGCAGATTTTGGAATATCATGCATTTTTCCATCAGACCAAAGCCATGTCTTAACTAATCAAGTAGGGACTCGTGGTTATGTAGCTCCTGAATACCAAAACCACAATGAACTTACTCATAAAAGTGATGTATTCAACTTTGGAGTGGTATTGGTTGAGCTTATAACATCTATCTCTGCTTATGATGCTTGTACACCTGACACAAATCTTCATGAAATTGCTACGACGAGAATCCAAAATCAAACAATGCATGAACTTGTGGACAATACCCTTGGATATGATTTGGATTCCGATGTCGAGGAAATGGTAAATCTCGTGACAGAGCTAGCTGGTCAGTGTCTACATGGATCCCGAGAGGCTAGACCTACCATGCATGAAGTTTTAATAGCTTTACAGGATATTCAGCGTGTGGGTCAGAATGACATGCAACATGCTGACGTGGACATACAAGGCCCTACTGATGAAATTGAGTTGTTAGCACAATCCACCACCACCTAA 1134 0.3845 MMQTVYVVSNSKLFDFVTMNCKNRITIPGIKNTSTNSSDAVMRFLKKGFEVRWSGVGEEKCRACMRSGATCGFDKSKIEVTCLFKRSATTKGELLDGRRIAVKKIRDNDRLDQFLNEPETLSYLSHPNLVSLYGCISSRGPDLMLVYEYVSNGTVYEHLHGDRETHENLPWSTRMNITVETASALKYLHASNIIHRDIKTNNILLDANFHVKLADFGISCIFPSDQSHVLTNQVGTRGYVAPEYQNHNELTHKSDVFNFGVVLVELITSISAYDACTPDTNLHEIATTRIQNQTMHELVDNTLGYDLDSDVEEMVNLVTELAGQCLHGSREARPTMHEVLIALQDIQRVGQNDMQHADVDIQGPTDEIELLAQSTTT* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0813 377 Pfam Wall-associated receptor kinase C-terminal 12 85 IPR032872 -
Psa1g0813 377 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 91 372 - -
Psa1g0813 377 ProSiteProfiles Protein kinase domain profile. 27 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0813 377 SMART serkin_6 73 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0813 377 Gene3D Transferase(Phosphotransferase) domain 1 151 367 - -
Psa1g0813 377 SUPERFAMILY Protein kinase-like (PK-like) 92 348 IPR011009 -
Psa1g0813 377 Gene3D Phosphorylase Kinase; domain 1 87 150 - -
Psa1g0813 377 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 91 372 IPR044652 -
Psa1g0813 377 Pfam Protein kinase domain 96 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0813 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0813 Psa-Chr1 52267761 52269516 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0813 92 347 Receptor kinase-like Gene Family AT1G25390 53.640 2.77e-86 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Psa1g0813 Pkinase 4.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0813 - - mtr:MTR_6g083020 307.76