Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0805 ATGCCTGTTCTCACAAGACGCATGAAATGGAGAAGACCCATTTCAGAAACTGATCCATCTTCACAAATTTCTCCCATAATCCAATCCATTTCTTGCAAATCCACAATCACCACCCTCTTTTCCACTTTCTCCAACAACGAAACCACACATGACAGTAACAAAAACAAGACAAATAGCAACAACAAAAACAGAAACAGTAACAGTGTCAATAACACCAATACAAAGTTTTCTGCAGCATCAACCCTCAGAGGACTCGGTTGCACCGCCGGTGCATCGCAACAAGTGTCTGTACCGGCGGTGATCCGATCCTCTGCGGATTGGCAAAAGAACAGAAAAAAGAAGAACAGAAGGAACAGTAACATTAACATTAAAAGCAACAAAACATGTCATGGTGTTGTTGTTGTGGATGATGTTCCTTTTCAGGATGTTTGGTGTGGACCTGGAATTGGGTTCTCATCTGATGCTGTTTCTGAAGATTGTGTTGTGACTAGAAAAAATGTTTCTTCAAGAGGAAAACTTGATAACGGGGAAAGAATATCATCACATAGGGAGCGTTCATCTTATTTTGGAAGGCATAATTTAAATCAATCAAGTTTATCATTTTTGGATGATGATGACGATGATGATAATTCTGATGTTTTCACGACACGACATGGATTAGAGTCTTTTGGTAATGGTAGATTCTATCGTAATTCTGAGATAATGATAATTCAAGGAAAACGATTAATGGGAGGACGAGTTAATTCGCGCGACCAATTTAGAGATTGGAGACTCGATGTTGATAATATGTCGTACGAGCAATTGCTTGAGCTCGGAGAAAGAATTGGATATGTGAAAACTGGACTTAAGGAAGATGAGATGAGACATAACATAAAGAAGATTAAGGTTTTGGTTTCAAATGATATGTCAAAACATCAAATAGACAAAAAGTGCACAATTTGTCAAGAAGAGTATGAATTAGATGATGAATTGGGGATGCTAAATTGTGAACACTGCTATCATTTTCAGTGTATAAAACAATGGCTTGTGCTTAAAAATTTCTGTCCGGTTTGTAAGCAAGAAGTTGCGGTTCGACGTTGA 1080 0.3806 MPVLTRRMKWRRPISETDPSSQISPIIQSISCKSTITTLFSTFSNNETTHDSNKNKTNSNNKNRNSNSVNNTNTKFSAASTLRGLGCTAGASQQVSVPAVIRSSADWQKNRKKKNRRNSNINIKSNKTCHGVVVVDDVPFQDVWCGPGIGFSSDAVSEDCVVTRKNVSSRGKLDNGERISSHRERSSYFGRHNLNQSSLSFLDDDDDDDNSDVFTTRHGLESFGNGRFYRNSEIMIIQGKRLMGGRVNSRDQFRDWRLDVDNMSYEQLLELGERIGYVKTGLKEDEMRHNIKKIKVLVSNDMSKHQIDKKCTICQEEYELDDELGMLNCEHCYHFQCIKQWLVLKNFCPVCKQEVAVRR* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0805 359 MobiDBLite consensus disorder prediction 47 70 - -
Psa1g0805 359 SUPERFAMILY RING/U-box 310 357 - -
Psa1g0805 359 SMART ring_2 311 351 IPR001841 -
Psa1g0805 359 MobiDBLite consensus disorder prediction 1 22 - -
Psa1g0805 359 ProSiteProfiles Zinc finger RING-type profile. 311 352 IPR001841 -
Psa1g0805 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 11 357 IPR045191 GO:0061630
Psa1g0805 359 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 11 357 - -
Psa1g0805 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 357 IPR013083 -
Psa1g0805 359 Pfam Ring finger domain 310 352 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0805 Psa-Chr1 52046909 52048803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0805 72 266 C3H Transcription Factor Family AT1G73760 40.807 7.86e-36 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0805 - - lja:Lj2g3v0694690.1 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0805 1 52046909 52048803 Psa1g0805 1 52046909 52048803 ECH