Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0793 GCCAACCATCAGATAGTAGAACAACATTAACTTGGCCTAACCGATTGGATATTGCAATTGATATAGCAAGTGCATTGGACTATCTTCACTACAATGGTATTGTTCACCGCAATGTAAAGTCTAACAATATTTTCCTTGATAAAAACTTTTGTGCTAAAGTCGGTAACTTTCACTTGTCAAAGAAACTTGTTGTTGAAGCAACCGATGTTACGAGAGACTTGATAGGAACAAGTGGTTATATAGACCCAGAGCTTGTGTCAAAAGGCTTACTTAGTGTTAAAAATGATGTTTATAGCTTTGGGGTGGTGTCATGTGAGCTTGTGTCATCTATGCTTGCAGAATATTACATTCATAATGAAGAAAGTCTAGCTACACTTTTAATGACAAAATTTGAAAACCAAGCTTTGGTGGAGCTTTTGGATCCAAATCTTGGCTTTCAGTCAGACGTTAAGATCGACAAGATGATGACTGCTACGGCTGAGCTTGCGTTTTGGTGTTTGCAATGTCTACAAGAATTAAGGCCTAACATGGACCAAGTTCTAGAGGCTCTCAATTGCATAAAACAAGGGCGTCATGAGTTAAACCCAATAAAAGTGTATGAGTACATCTCTAATGGAACTCTTTCACAGCATCTCCATGGATTTTCACGTAGTAGTACATTATCGTGGCCTAGTAGATTGAATATTGCCATTGAATCTGCAAAGGCATTGGTATATCTTCATGACTCAGGTATCATCCATCGCGACGTAAAAGGAAGTAATATTCTGTTGGATGAAAATTTTACTGTTAAACTTGCAGATTTTGGACTGTCGCGATTTCTTCCGGACCATGTTACTCATGTTTCAACTCTTCCGGTAGGAACTCGTGCTTACATTGATCCAGATTACTATGAAACTAGAAAGGTGAGTGACAAAAGTGATGCGTATAGCTTTGGGATGATCTTATTTGAGCTTATATCATCCAAACCCGCAAGTTTAATGCAAGGTACGGAGCATGTCACTCTTGCCCAATTTGCAATGTCTATAATCGTAAGCAAGGATTTAAAGGGGCTAGTGGATCAAACTCTTGCAAATTCTTTTAATGTAGATGTAGTGGAAATGACAACAACAGTGACAGAGTTAGCATTTCAGTGTGTCCAGTGTCCCAAGGAACTCAGGCCAGCCATGAAACAGGTGTTACAGGACATGGGGATTCAACCAAACAACATAGGAGTAGATTTTGGTGATTCTCCTGACATAGACAAAATATTCCTAAATTTATAA 1262 0.3867 QPSDSRTTLTWPNRLDIAIDIASALDYLHYNGIVHRNVKSNNIFLDKNFCAKVGNFHLSKKLVVEATDVTRDLIGTSGYIDPELVSKGLLSVKNDVYSFGVVSCELVSSMLAEYYIHNEESLATLLMTKFENQALVELLDPNLGFQSDVKIDKMMTATAELAFWCLQCLQELRPNMDQVLEALNCIKQGRHELNPIKVYEYISNGTLSQHLHGFSRSSTLSWPSRLNIAIESAKALVYLHDSGIIHRDVKGSNILLDENFTVKLADFGLSRFLPDHVTHVSTLPVGTRAYIDPDYYETRKVSDKSDAYSFGMILFELISSKPASLMQGTEHVTLAQFAMSIIVSKDLKGLVDQTLANSFNVDVVEMTTTVTELAFQCVQCPKELRPAMKQVLQDMGIQPNNIGVDFGDSPDIDKIFLNL* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0793 419 SMART serkin_6 79 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0793 419 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 198 395 IPR044652 -
Psa1g0793 419 SUPERFAMILY Protein kinase-like (PK-like) 6 188 IPR011009 -
Psa1g0793 419 ProSiteProfiles Protein kinase domain profile. 79 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0793 419 PANTHER TYROSINE KINASE FAMILY PROTEIN 198 395 - -
Psa1g0793 419 PANTHER TYROSINE KINASE FAMILY PROTEIN 7 197 - -
Psa1g0793 419 SUPERFAMILY Protein kinase-like (PK-like) 195 394 IPR011009 -
Psa1g0793 419 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 7 197 IPR044652 -
Psa1g0793 419 Pfam Protein kinase domain 16 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0793 419 Pfam Protein kinase domain 198 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0793 419 Gene3D Transferase(Phosphotransferase) domain 1 202 402 - -
Psa1g0793 419 Gene3D Transferase(Phosphotransferase) domain 1 3 198 - -
Psa1g0793 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0793 Psa-Chr1 51042512 51043959 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0793 185 398 Receptor kinase-like Gene Family AT1G25390 50.917 2.67e-61 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Psa1g0793 Pkinase 1.8e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0793 - - var:108343962 454.136