Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0781 ATGGACATTGAGGAGGACATCCGATCCTTACAGCTCGAGTCAGCAGACGTAGCAGAAGACAGCAATGGGGTTGTAAGTCCAGATGATGGAAAGACAGAAGTTGAGGAATCTATTAATACAGATCAAGAAGTTGAGGAATCTATTAATGCAAAAGAAGATTCTAAGCCGGAGGTTCAAGCACAAACTATTAAGACTGAGATAAAAGATAAAGAGGTTCCGCCAGTGCAAGATGAAGAGGACGAGGACATGGCTATCAAAAGACACTTAAATGTTGTTTTTATTGGTCACGTGGATGCTGGTAAATCAACAACAGGAGGCCAGATACTTTTCCTCAGTGGTCAGGTCGATGAAAGAACTATCCAAAAATACGAGAAAGAAGCCAAGGACAAAAGTAGAGAAAGCTGGTATATGGCTTACATAATGGACACGAATGAGGAGGAGAGGGCCAAGGGAAAGACAGTTGAAGTTGGAAGAGCACACTTTGAGACAGAGACATCAAGGTTTACGATTTTGGACGCACCCGGTCATAAGAGTTATGTCCCTAACATGATCAGTGGTGCATCTCAAGCTGATATTGGAGTATTGGTAATCTCTGCTCGAAAGGGAGAATTTGAAACTGGATATGAAAAAGGCGGTCAAACCCGTGAACATGTTCAGCTTGCAAAAACACTGGGGGTGTCTAAGCTCCTTGTTGTTGTTAATAAAATGGATGATCCTACAGTGAATTGGTCAAAAGAAAGGTATGATGAAATTGAGTCGAAGATGATACCATTTCTTAAGCAATCGGGTTACAATGTGAAGAAAGATGTCGGGTTTTTACCTATATCTGGGCTGATCGGTGCAAACCTAAAAACAAGAATGGGTAAAAGCATTTGTCCATGGTGGGATGGTCCTTGCCTATTTGAAGCTCTTGACGCCATTGAAGTTCCTCTACGAGATCCTAACGGTCCTTTTAGGATGCCTATACTCGACAAATTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTGGAATCTGGTAGTGTCCGTGAGGGAGATTCCTTGTTGATTATGCCAAATAAGGATCAAGTGAAAGTTGTTGCTATATATATTGATGAGAACCGGGTTAAACGTGCTGGACCTGGTGAAAATTTACGGGTTAGAGTATCCGGTGTTGAAGAAGAGGACATATCATCTGGATTTGTCCTGTCTAGTACTGCAAATCCAATACCAGCTGTAACTGAGTTTGTTGCTCAGCTGGCAATCCTTGAATTGCTAGACAATGCAATTTTTACTGCTGGGTACAAGGCTATCCTGCATGTCCACTCTGTAGTTGAAGAATGTGAGGTTATTGAGCTCTTGCATCAAATTGATCCAAAGACAAAGAAGCCTATGAAAAAGAAAGTCCTCTTTGTGAAGAATGGTGCAGGTGTTGTGTGTCGAATTCAGGTTAGTAACTCCATATGCATAGAGAAATTCTCTGACTTTCCACAACTTGGGAGATTCACTCTTCGCACTGAAGGAAAAACTGTTGCCGTGGGAAAAGTCATGGGTTTTTAG 1539 0.4185 MDIEEDIRSLQLESADVAEDSNGVVSPDDGKTEVEESINTDQEVEESINAKEDSKPEVQAQTIKTEIKDKEVPPVQDEEDEDMAIKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERAKGKTVEVGRAHFETETSRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYEKGGQTREHVQLAKTLGVSKLLVVVNKMDDPTVNWSKERYDEIESKMIPFLKQSGYNVKKDVGFLPISGLIGANLKTRMGKSICPWWDGPCLFEALDAIEVPLRDPNGPFRMPILDKFKDMGTVVMGKVESGSVREGDSLLIMPNKDQVKVVAIYIDENRVKRAGPGENLRVRVSGVEEEDISSGFVLSSTANPIPAVTEFVAQLAILELLDNAIFTAGYKAILHVHSVVEECEVIELLHQIDPKTKKPMKKKVLFVKNGAGVVCRIQVSNSICIEKFSDFPQLGRFTLRTEGKTVAVGKVMGF* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0781 512 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 86 312 IPR000795 GO:0003924|GO:0005525
Psa1g0781 512 Gene3D Translation factors 315 400 - -
Psa1g0781 512 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 407 511 IPR009001 -
Psa1g0781 512 Pfam Elongation factor Tu C-terminal domain 403 510 IPR004160 -
Psa1g0781 512 Pfam Elongation factor Tu domain 2 330 396 IPR004161 GO:0005525
Psa1g0781 512 Pfam Elongation factor Tu GTP binding domain 86 299 IPR000795 GO:0003924|GO:0005525
Psa1g0781 512 CDD EF1_alpha 90 310 - -
Psa1g0781 512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 321 IPR027417 -
Psa1g0781 512 PRINTS GTP-binding elongation factor signature 90 103 IPR000795 GO:0003924|GO:0005525
Psa1g0781 512 PRINTS GTP-binding elongation factor signature 149 157 IPR000795 GO:0003924|GO:0005525
Psa1g0781 512 PRINTS GTP-binding elongation factor signature 169 179 IPR000795 GO:0003924|GO:0005525
Psa1g0781 512 PRINTS GTP-binding elongation factor signature 185 196 IPR000795 GO:0003924|GO:0005525
Psa1g0781 512 PRINTS GTP-binding elongation factor signature 229 238 IPR000795 GO:0003924|GO:0005525
Psa1g0781 512 PANTHER BNAA06G12300D PROTEIN 2 506 - -
Psa1g0781 512 MobiDBLite consensus disorder prediction 45 60 - -
Psa1g0781 512 MobiDBLite consensus disorder prediction 1 60 - -
Psa1g0781 512 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 142 157 IPR031157 -
Psa1g0781 512 SUPERFAMILY Translation proteins 309 402 IPR009000 -
Psa1g0781 512 Gene3D - 67 310 IPR027417 -
Psa1g0781 512 Gene3D Translation factors 405 512 - -
Psa1g0781 512 CDD eRF3_C_III 404 510 - -
Psa1g0781 512 CDD eRF3_II 317 398 - -
Psa1g0781 512 PANTHER TRANSLATION FACTOR 2 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0781 Psa-Chr1 50122441 50134596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0781 86 507 Eukaryotic Initiation Factors Gene Family AT5G60390 37.882 5.87e-97 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0781 K03267 - gmx:100784412 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0781 1 50122441 50134596 Psa1g0781 1 50122441 50134596 ECH