Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0747 ATGGGCATCAAAGATCTTCTCAGATTCATGAAACCTTACGTTGAACCCATTCACATCAAGAACTACGCTGGCAAACGCGTGGGTATTGATGCATATTCATGGCTTCATAAAGGAGCTTATTCATGTAGTATGGAGCTTTGTCTTGATTCTGATAGTGAAAGGAAATTGCGTTACATTGAATACTTTATGCATAGAGTGAATCTGCTTCGGTACTATAAAGTAACACCGGTTGTTGTTTTTGATGGTGGCAATGTTCCTTGCAAATCAGCAACTGAGAAAGAGAGGAACAAGAAAAGAAATGCTTATCATGATTTGGCAATGGCTAAGCTCAAAGAAGGGAATGTTAATGCTGCTTCAGAGCTATTTCAGAGAGCAGTGAATATTACTCCTCTTATGGCACATAAGCTTATTCAGACTTTGAAATCAGAGAACATTGAGTTTGTTGTAGCTCCATATGAAGCTGATGCTCAGTTAGCATACTTGTCCAGTCTTGAGACCGAAAAGGGCGGTATTGCAGCGGTGATTACAGAAGATAGTGATCTGATAGCTTACGGTTGTCCAGATGTTATTTTTAAGATGGACCGTGAAGGGAACGGTGAAAGAATAAAGTTAGAGAAGGTTTTTTCTGCCGAATCTTGTAAACCTTCATTTCGGAGTTTTGATACGAAGCTTTTCACAGGTATGTGTGTTTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGCATTGGTGTTGCTCGAGCTCATGCTTTAGTTTTGAAGTATCAGAATATCGATCGTGTCTTGTCTGTTCTTAAGTTTGAGAAAGGCGACCAAATGCCCGAAGATTATGCCAAATCCTTCAAAGACGCACTTGCTGTATTTCAGCACGCTCGAATATATGATATCAATACTAAAGAGCTCAAGCACCTGAAGCCTCTTCCAGAAAATTTTCGCGAGTCACTTGACGGAAACCTCGATTTTTTGGGACCAGAACTTCCCTCAACAATAGTCAAAGCAATAGCTGAAGGAAACTTGAATCCATCAACTAAGAAAGCTTTTGATAATTCTGAAATTTCTAGACTTCCTTTACACTCCATAGATCTCCAAATCACCGGTCAACTCAGGAAACGTGAAGTTTCTACACCGATTAAGCAGGAAAACTGTTTTTCAGTCTTTGCCTCCCAAAACATCAAAGAAAATTATACAGTTACAAAGCTCTCAGATAAGAACAAATATTCAAATGAAGCATTGGCACTTCAGAAACTAATCATGCCATTAGGAACAAATGAAACAACAAAAAAGACCGTTACATGTGATAAAACACCATTGAAGGTTCCTAACAACAATCCTTTTAGGATAAGAAAACATAAAGAGGAGGAATTAAATTTCTTTCAGAAAGACGAAACAGTTGAAGAAATTTCCATCGTAAGCAGTGTTGAATATATCGGTCTTGATGGTTACGTGTCACCGAGTAACTCTCAAGGAAAAAGGTCTCAGAATGAAGAAACTTCTGTTGTCAGTGGTGTGGAATATATCGATCTTGATAATTACATGTCACCACAAGAAAAAGGGTCTACAAATTTCTCAAGGAAAAGGAAATTTGAGAATATTTGTTTAGATGAAGTAGAAGCGAAAGACGAACAGGTCTCGGGAGTAACCGAAGTGGAATGCTTGAATGTGGAGTCTCAAGAAAGTGTCAAGTCCAAGATTAGGAAGAGTGATGATTTGAAAGGAAGTGGTGGAAATGAAAAGAAATCCAAGAAAAAGGGAAGTAACATTAGAACAATTCTGAGTTTCTTTTCAAGAGTGTAA 1794 0.3829 MGIKDLLRFMKPYVEPIHIKNYAGKRVGIDAYSWLHKGAYSCSMELCLDSDSERKLRYIEYFMHRVNLLRYYKVTPVVVFDGGNVPCKSATEKERNKKRNAYHDLAMAKLKEGNVNAASELFQRAVNITPLMAHKLIQTLKSENIEFVVAPYEADAQLAYLSSLETEKGGIAAVITEDSDLIAYGCPDVIFKMDREGNGERIKLEKVFSAESCKPSFRSFDTKLFTGMCVLAGCDFLPSVPGIGVARAHALVLKYQNIDRVLSVLKFEKGDQMPEDYAKSFKDALAVFQHARIYDINTKELKHLKPLPENFRESLDGNLDFLGPELPSTIVKAIAEGNLNPSTKKAFDNSEISRLPLHSIDLQITGQLRKREVSTPIKQENCFSVFASQNIKENYTVTKLSDKNKYSNEALALQKLIMPLGTNETTKKTVTCDKTPLKVPNNNPFRIRKHKEEELNFFQKDETVEEISIVSSVEYIGLDGYVSPSNSQGKRSQNEETSVVSGVEYIDLDNYMSPQEKGSTNFSRKRKFENICLDEVEAKDEQVSGVTEVECLNVESQESVKSKIRKSDDLKGSGGNEKKSKKKGSNIRTILSFFSRV* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0747 597 MobiDBLite consensus disorder prediction 556 585 - -
Psa1g0747 597 SMART xpgn3 1 102 IPR006085 GO:0004518
Psa1g0747 597 Gene3D - 218 291 - -
Psa1g0747 597 CDD PIN_EXO1 1 208 IPR044752 GO:0046872
Psa1g0747 597 ProSiteProfiles TPR repeat profile. 99 132 IPR019734 GO:0005515
Psa1g0747 597 MobiDBLite consensus disorder prediction 559 584 - -
Psa1g0747 597 Pfam XPG N-terminal domain 1 100 IPR006085 GO:0004518
Psa1g0747 597 ProSitePatterns XPG protein signature 2. 144 158 IPR019974 GO:0016788
Psa1g0747 597 CDD H3TH_FEN1-like 225 295 - -
Psa1g0747 597 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 222 349 IPR036279 -
Psa1g0747 597 Pfam XPG I-region 144 235 IPR006086 GO:0004518
Psa1g0747 597 Gene3D - 1 213 - -
Psa1g0747 597 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 1 587 - -
Psa1g0747 597 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
Psa1g0747 597 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 587 IPR006084 -
Psa1g0747 597 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Psa1g0747 597 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Psa1g0747 597 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Psa1g0747 597 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Psa1g0747 597 SMART xpgineu 141 213 IPR006086 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0747 Psa-Chr1 48325682 48328976 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0747 1 277 Core DNA Replication Machinery Family AT5G26680 24.739 1.93e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0747 K10746 - gmx:100817932 790.801