Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0727 ATGTCACCAGTTGGATTACCACCAGGTTTCAGGTTTCATCCAACTGATGAAGAGCTTGTGAATTATTATCTAAAGAGAAAAATCAGTGGTCAAGAAATTGAACTTGATATCATTCCTGAAGTTGATCTTTATAAATGTGAACCTTGGGAATTGGCAGAGAAATCATTTTTGCCAAGTAGAGATCCAGAGTGGTATTTTTTTGGACCAAGGGACAGAAAATACCCTAACGGATTCAGAACAAATCGAGCAACAAGAGCAGGTTACTGGAAATCAACTGGAAAAGACAGAAGAGTTTCATCCCAAAATAGACCTATTGGTATGAAGAAAACATTGGTTTACTATAGAGGAAGAGCTCCTCAAGGAATTAGAACTGATTGGGTTATGCATGAGTATCGTCTCGACGATAAAGAGTGCGAGGACAACTCCGGATTACAGGATACTTATGCATTGTGTCGCGTGTTCAAGAAAAACGGAATTTGTTCTGACATGGAAGAGCAACAAGCGCAAGCGCAATGTAACTTGTCACTAATAGAATGTTCCCAAACCATGATCAATGAGTGCGAAACGATGTCTCCGGACATACTTGGTGCGTCGTCTTCATGCTTAGACGAGGAAGACAAAGATGATTCGTGGATGCAGTTCATTACAGAAGATGCATGGTATTCTTCTAATGCAGCAATGGTTGGTGGTGAAGAAGTTTCACATGTTACATTTACAAACTAA 723 0.3983 MSPVGLPPGFRFHPTDEELVNYYLKRKISGQEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVSSQNRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKECEDNSGLQDTYALCRVFKKNGICSDMEEQQAQAQCNLSLIECSQTMINECETMSPDILGASSSCLDEEDKDDSWMQFITEDAWYSSNAAMVGGEEVSHVTFTN* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0727 240 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Psa1g0727 240 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Psa1g0727 240 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Psa1g0727 240 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 240 - -
Psa1g0727 240 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 240 - -
Psa1g0727 240 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0727 Psa-Chr1 47072439 47075738 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0727 1 229 NAC Transcription Factor Family AT3G17730 76.349 2.10e-132 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa1g0727 NAM 6.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0727 - - gmx:100788036 474.552