Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0725 ATGGTTACTCCTACTGCTATGACTAACATTCTTGTTGGAGTACCTTCTCTTTCTCTTCCTTCATTTCACTTGCCAAATTCAAATATTTTCACTCTCAACTCCAAAATTAAGACCCTAAACCATAAACTTCATCTCAATTTCTCACAAACCAACCACACAACAACCCTATTTCCATCTTCCTTATCATCATCAAAATCACTCAGAAACAGAACTAGTTGTTACGTGTTGTCTTGTCTTCCTCCTGCTTCTGAGTCCTCATCCTCCAATACTACACCCTCTTCTACTTCAACTAGGCTATATGTCAGTGGGCTATCATTTCGAACAACGGAAGAGAGCTTGCGAAATGCATTTAAGAATTTCGGTCAACTTGTGGAAGTCAATCTTGTGATGGATAAAGTTGCGAATAGACCAAGAGGGTTTGCTTTTCTTCGTTATGAAAACGCAGAGGGATCCAACAAGGCTATAGAAGGAATGCATGGAAAGTTCCTGGATGGCAGAGTCATATTTGTGGAAGTCGCCAAACCAAGATCAAAGCAACGACAAAGACTCAATCAGAACACTATGTAA 567 0.3986 MVTPTAMTNILVGVPSLSLPSFHLPNSNIFTLNSKIKTLNHKLHLNFSQTNHTTTLFPSSLSSSKSLRNRTSCYVLSCLPPASESSSSNTTPSSTSTRLYVSGLSFRTTEESLRNAFKNFGQLVEVNLVMDKVANRPRGFAFLRYENAEGSNKAIEGMHGKFLDGRVIFVEVAKPRSKQRQRLNQNTM* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0725 188 SUPERFAMILY RNA-binding domain, RBD 85 185 IPR035979 GO:0003676
Psa1g0725 188 PANTHER RNA-BINDING PROTEIN 1 27 186 - -
Psa1g0725 188 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 168 IPR000504 GO:0003723
Psa1g0725 188 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 175 IPR000504 GO:0003723
Psa1g0725 188 PANTHER TRANSFORMER-2-RELATED 27 186 - -
Psa1g0725 188 SMART rrm1_1 98 171 IPR000504 GO:0003723
Psa1g0725 188 Gene3D - 81 187 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0725 Psa-Chr1 47056268 47058531 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0725 67 186 Eukaryotic Initiation Factors Gene Family AT4G34110 30.645 1.27e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0725 - - gmx:100305561 189.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0725 1 47056268 47058531 Psa7g0833 7 60542282 60545484 ECH
Psa1g0725 1 47056268 47058531 Psa1g0725 1 47056268 47058531 ECH