Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0724 ATGGATATTAAGGATCAAGTTGAAGGCACAAAGTCAACTATAATCGGCACAATTAGTAAGTGTCATTCCAAAGGTGGAGCGGTGTCTGAAAATGTTGTGAAGCCGCAGGATATACCTTCTGTTGGAAACGACCAGACTCCCAAGGCGAGGAAACCGTATACCATCACAAAACAAAGGGAGAAGTGGACTGAAGAAGAGCATCAAAAGTTCGTTGAGGCTTTGAAGTTATATGGCCGTGGCTGGCGTCAAATTGAAGAACATATAGGTTCGAAAACTGCTGTTCAGATTCGAAGCCATGCTCAAAAGTTTTTCTCTAAGGTTGTGCGGGAACCTGACGGCAGCGCTGAAAGTCCGATTCAGCCAATCGACATACCTCCTCCTCGGCCGAAGAGGAAGCCTCTTCATCCATACCCTCGCAAGTCAGTTGACTCTTTCAAAGGACAGTCCATCCCGAATGATTCAGAAACATCTCCATCCGTTAACCTGTCAGTTGCAGAAAACAACACCCAATCTCCAACCTCGGTACTATCTGCATTTGGCTCGGAAGCATTCGGGTCAGCAGCATTTTCTGAGCAGACTAACAGATGTCTTTCTCCAAACTCTTGTACCACCGAGATTCACCCGGTCAGCTTGTCGCCTCTTGAAAAAGAAAATGATTGCCAGACATCGAAATCCTCTGAGGAGGAAGAGAAAGGAACTCTAGCTTCAGTTCCTTTATCCACCGACTCAAAACCACTTATATGCACGAAGCCCGAGATTATTTCTTCGGAAGAAACTCAATGTTTCAAGGAAGATGCTGCGGATATGCCACACATCACTAGTATTAAACTGTTTGGCAGAACAGTCTCTATGGTTGATACTCAGAAAACAGTAGAAGACATCAAATCTGATGAAATTGTTGAGAATGAGAAAGTTGGCTTAGAAGAGGAATCAGAGAAACTTGTTACACGACTATCACTAGGCATGTGTAGTGGTAATTGTGACAGTATGGAACAACCGAAGGAGAATCCGTGCGGCGGCGGTGAATGCGCATCATCTTTACCATGTTGGAGTTTGTACCAAGGTCTTCCCGCTTTGAGCCTCAAGCCATGCAATCATCAGATTTTAAGTCCTGTGCCTCTCAGGCCTTGTTTGAAGGTGAGAACTCGAGAGGAGGAAAGTTCTTGCACAGGTTCTAATACCGGATCAGTTTGTGATACGGAAAATCAAAGCAAGAACAGTTCATCAGATACCGACGATACTCAAAGCCGAAAACATCATCATCATGAAGGAGTGTTCCTCAAGAAATCTGGAAGAGGGTTTGTACCATATAAAAGATGTTTATCTGAAAGAGACGAAAATTCTTTAATTGTTGGGTTGGAAGAAAGAGAAGCGCAAAGAGCTCGTGTGTGTTCATAG 1398 0.4413 MDIKDQVEGTKSTIIGTISKCHSKGGAVSENVVKPQDIPSVGNDQTPKARKPYTITKQREKWTEEEHQKFVEALKLYGRGWRQIEEHIGSKTAVQIRSHAQKFFSKVVREPDGSAESPIQPIDIPPPRPKRKPLHPYPRKSVDSFKGQSIPNDSETSPSVNLSVAENNTQSPTSVLSAFGSEAFGSAAFSEQTNRCLSPNSCTTEIHPVSLSPLEKENDCQTSKSSEEEEKGTLASVPLSTDSKPLICTKPEIISSEETQCFKEDAADMPHITSIKLFGRTVSMVDTQKTVEDIKSDEIVENEKVGLEEESEKLVTRLSLGMCSGNCDSMEQPKENPCGGGECASSLPCWSLYQGLPALSLKPCNHQILSPVPLRPCLKVRTREEESSCTGSNTGSVCDTENQSKNSSSDTDDTQSRKHHHHEGVFLKKSGRGFVPYKRCLSERDENSLIVGLEEREAQRARVCS* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0724 465 MobiDBLite consensus disorder prediction 36 62 - -
Psa1g0724 465 MobiDBLite consensus disorder prediction 36 52 - -
Psa1g0724 465 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Psa1g0724 465 CDD SANT 61 104 IPR001005 -
Psa1g0724 465 MobiDBLite consensus disorder prediction 208 238 - -
Psa1g0724 465 SUPERFAMILY Homeodomain-like 53 107 IPR009057 -
Psa1g0724 465 Pfam Myb-like DNA-binding domain 59 102 IPR001005 -
Psa1g0724 465 ProSiteProfiles SANT domain profile. 57 108 IPR017884 -
Psa1g0724 465 MobiDBLite consensus disorder prediction 400 425 - -
Psa1g0724 465 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Psa1g0724 465 PANTHER PROTEIN REVEILLE 7-RELATED 4 452 - -
Psa1g0724 465 PANTHER SWI/SNF COMPLEX-RELATED 4 452 - -
Psa1g0724 465 MobiDBLite consensus disorder prediction 145 163 - -
Psa1g0724 465 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 57 106 IPR006447 GO:0003677
Psa1g0724 465 Gene3D - 61 108 - -
Psa1g0724 465 MobiDBLite consensus disorder prediction 108 163 - -
Psa1g0724 465 SMART sant 58 106 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0724 Psa-Chr1 47051915 47056203 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa1g0724 Myb_DNA-binding 3.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0724 - - gmx:778089 569.311