Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0700 ATGGAGAGAGAATTTCTTGGCTTCACTTCCAAAAGTAATCCATGGATTACAATCAAAGAAGATGCTTCCAACAAATCAAAAGACCCAGTTAGGAGTTCAGCAATGCAGTGGTCATTCTCAAATAAGGTTTCAAATCTTCCTCAATTCTTGTCCTTCAAGAACACTCATGAAGATGCGTCAAGAAACATTCTAAGGGATCCAATAGTTTCTTCAGGATTCGTGACACAGGAAAATGTTAGCATAGGAAATCAAGTAGGAAACAAGCATGGAGTTTATCCTATGCAATGTTGTGATGCACAAACAATTTGCAATCAAGAATCAAGAACATTTTCAGTATCAAACCAATCTAATAATCAAACAAGTTCTGTTCTTCCATCCAATCTTGCTACATCTGGAATCAACATGGTTAATTCGGTTATAAAATCGCAATCTTTCGGTTCTAAATCCTCTGCTGCTACACCTCTATCTGTTCTTCCATCAATAGGTTCCATTGTTGGCTCTACTGACTTAAGGAATAGGAATTGTTCCAAATCCAATGGTACTATACCTGCTCAATTGACCATTTTTTATGGTGGTTCAGTATGTGTTTATGATGACATATCTCCTGAGAAGGCTAAGGCTATCATGTTATTAGCTGGAAATGGGACTAAAAAGCAGCCAGAAATCTCTATTCCTTCCAAAAAAGATGGTTTCATTATAAGTCAATCTTACCCATCACCATTGCCAAGTCCTCTTCCAATGGCTTCTCATGCAAATTCTCAACAAAGGGGAGGATCAAGTAGCAATAATGAAATCACAATTCTAAGATCTTTAGGACCTTCAAATGTCCCAAATAATCATTTAGAATCTTCTATTGTTGCTACTTCTATAGGATCTGCCCCTACAGAAATGATTCAATCAGTATGTTTGCCTCAAGCACGAAAAGCATCGTTGACTCGATTTTTGGAGAAACGGAAAGAAAGGGCAATGAGCACATCACCATACTATATGAACAAGAAATCAAATGAAAGCAGCACTCCTGGATCAGATAGTGCAAGTTTCTCCATTGATTTTTCTGGTTCAAGTTCTCAACCAGCTACAAACTTAAGAACAACATGTATGGAAGTTTAG 1110 0.373 MEREFLGFTSKSNPWITIKEDASNKSKDPVRSSAMQWSFSNKVSNLPQFLSFKNTHEDASRNILRDPIVSSGFVTQENVSIGNQVGNKHGVYPMQCCDAQTICNQESRTFSVSNQSNNQTSSVLPSNLATSGINMVNSVIKSQSFGSKSSAATPLSVLPSIGSIVGSTDLRNRNCSKSNGTIPAQLTIFYGGSVCVYDDISPEKAKAIMLLAGNGTKKQPEISIPSKKDGFIISQSYPSPLPSPLPMASHANSQQRGGSSSNNEITILRSLGPSNVPNNHLESSIVATSIGSAPTEMIQSVCLPQARKASLTRFLEKRKERAMSTSPYYMNKKSNESSTPGSDSASFSIDFSGSSSQPATNLRTTCMEV* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0700 369 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 237 369 - -
Psa1g0700 369 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 35 239 - -
Psa1g0700 369 Pfam Jas motif 304 329 IPR018467 -
Psa1g0700 369 MobiDBLite consensus disorder prediction 321 369 - -
Psa1g0700 369 MobiDBLite consensus disorder prediction 327 369 - -
Psa1g0700 369 SMART tify_2 179 214 IPR010399 -
Psa1g0700 369 Pfam tify domain 183 213 IPR010399 -
Psa1g0700 369 ProSiteProfiles Tify domain profile. 179 214 IPR010399 -
Psa1g0700 369 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 237 369 IPR040390 -
Psa1g0700 369 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 35 239 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0700 Psa-Chr1 45658234 45662657 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0700 35 334 Tify Gene Family AT3G17860 40.256 5.36e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Psa1g0700 tify 3.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0700 K13464 - gmx:100807288 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0700 1 45658234 45662657 Psa1g0700 1 45658234 45662657 ECH