Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0679 ATGGCGCTCGTCCACCGCCGCCGCCATCCCAACCTCCGTCTCCCAGAGATCTCCGACCACCGTCCTCGTTTCTCTGTCCCCCTTCCTCCCAACATCTACAAACAATCATCTTCCTCCGCCGGCTGTGACACCCTTTCTCCGGGTGACTTCGAGAAACTCGCCGTCCTCGGTCATGGCAACGGAGGCACCGTCTACAAAGTCCGCCACAAAGTCAGCTCTACCATCTACGCTCTAAAAGTCAACCACAACGACTCTGACCCCACCACGCGCCGCCGTACACTAGCCGAGATCAACATCCTACGCCGTGCCACCGATTGCCCTAACATCGTTAAATTCCACGGATCCTTTGAGAAACCCACCGGCGACATCGCGATTCTAATGGAGCTTATGGACTCCGGCAGCCTCGAAACCGCCCTCAAAACAAACGGAACGTTCTCCGAAACAAAACTCGCTACAGTGGCGCGTGAGGTTCTTAACGGGTTATCGTATCTCCACGCGCGTAACATAGCGCACCGTGACATTAAACCTTCGAACATCCTCGTTAACAACAAAAACGAGGTTAAGATAGCAGATTTTGGTGTTAGCAAGTCAATGGGTCGCACGCTTGAAGCATGCAACTCTTACGTTGGCACGTGTGCTTATATGAGTCCGGAACGGTTTGACCCGGAAGCTTATGGCGGGAATTATAACGGTTTTTCTGCTGATATATGGAGTTTGGGTTTAACCCTTTTCGAACTTTATGTGGGTCATTTTCCGTTTCTGCAATCGGGTCAACGACCCGATTGGGCTATGTTGATGTGTGCGATTTGCTTCTCCGACCCACCGAGTCTACCCGATACCGCTTCACTGGAATTTCGAGACTTTGTTGAGTGTTGCCTTAAGAAGGAATCCGGTGAGCGGTGGACTGCGGCTCAGTTATTGACCCACCCGTTTTTGTGTAAAGAAATGGATAGTTGTTAA 960 0.5146 MALVHRRRHPNLRLPEISDHRPRFSVPLPPNIYKQSSSSAGCDTLSPGDFEKLAVLGHGNGGTVYKVRHKVSSTIYALKVNHNDSDPTTRRRTLAEINILRRATDCPNIVKFHGSFEKPTGDIAILMELMDSGSLETALKTNGTFSETKLATVAREVLNGLSYLHARNIAHRDIKPSNILVNNKNEVKIADFGVSKSMGRTLEACNSYVGTCAYMSPERFDPEAYGGNYNGFSADIWSLGLTLFELYVGHFPFLQSGQRPDWAMLMCAICFSDPPSLPDTASLEFRDFVECCLKKESGERWTAAQLLTHPFLCKEMDSC* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0679 319 PANTHER SERINE/THREONINE-PROTEIN KINASE C01C4.3-RELATED 3 316 - -
Psa1g0679 319 SMART serkin_6 50 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0679 319 SUPERFAMILY Protein kinase-like (PK-like) 48 314 IPR011009 -
Psa1g0679 319 ProSitePatterns Protein kinases ATP-binding region signature. 56 79 IPR017441 GO:0005524
Psa1g0679 319 Gene3D Phosphorylase Kinase; domain 1 30 131 - -
Psa1g0679 319 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Psa1g0679 319 ProSiteProfiles Protein kinase domain profile. 50 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0679 319 Pfam Protein kinase domain 50 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0679 319 CDD PKc_MAPKK_plant_like 49 312 - -
Psa1g0679 319 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 3 316 - -
Psa1g0679 319 Gene3D Transferase(Phosphotransferase) domain 1 133 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0679 Psa-Chr1 43753821 43755454 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0679 1 316 MAP Kinase Kinase Gene Family AT1G73500 58.307 4.13e-123 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Psa1g0679 Pkinase 5.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0679 K20604 - gmx:100804100 515.383