Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0675 ATGGTGTTAGGTTGGGGAAGAAGGAAGAACAACAAAAAGAACAAAGGTGGAAAACCAAACATGGAAGTGGTGATTCCAAATCAATTCAAGTGTCCAATTACTCTTGATTTGATGAAAGATCCGGTTACATTATCAACAGGAATCACTTATGATAGAGAGAGTGTTGAAAGATGGTTTGATGAAGGAAACATCACTTGTCCACTTACAAATCAAGTTGTGAGAAATTTTGACATGATTCCAAATCATTCTCTTAGGATAATGATTCAAGATTGGTGTGTTGAGAATAGACAAAATGGTTTTGAGAGGATTCCAACTCCGAGGATACCGGTTAGCCCGACCGATGTTTCCGAGCTTGTTTTTCGAGTTAAGGAATGTGCAAGAGGTTTGGATCAATATGGTTGTGTTGAGTTGGTTCAAAAAATGGAGAAATGGAGCAATGAAAGTGGGAGGAACAAGAAATGTATAGTTGAGAATGGAGCAATAAGTGGATTGGCTTTAGCTTTTGAAGCTTTTGCTAATGATTCTATCGAGAGGAATTTGATTGTTTTAGAAGTGATTTTGTCATCACTTAATTGGATGTTTCCACTTCAATTAGAAGCTCAAGAATCTTTAGGCTCAAAAGCTTCTTTGCATTGCATGGTTTGGTTTTTGAAGCATCAAGATGTTAAGGGAAAAGAAAAAGCTATTATTGCATTGAAAGAGATTCTTTCTTTTGGTGATGAGAAGCATGTGGAAGCACTTTTGGAGATTGAAGGAGTTAATGAGCTTTTGATTGAGTTCATTAACAAGAGAGTTAGTCCTATAATTACAAAAGCTTCATTGAGGATTGTTTGGTATTTGGTTTCATCCAATTCTAGCTTTAATGAAAAGTTGAAATTTTCATTTGTTGAATTGGGTTTGGTTTCTTCAATTTTGAACATTCTTATTGACTCAGAAAAGAGTGTTTGTGAAAAAGCTTATACTATTTTGGATTCTTTATTAAGCTGTGATTTTGGAAGGGAAAAAGCTTATGAAAATGACTTAACAATTCCTTTGTTGGTGAAGAAAATATTGAGAGTTTCACCATTGACTACAGAGTACTCTGTTTCTTGTATTTGGAAGCTATGCAAATTTGAAGAGAAAAACTATGAAGGAAAAGCTTTGATAGAAGCACTTCAAGTAGGTGCTTTTCAGAAGCTATTATTGGTATTACAAGTTGGTTGTAGTGATGAGACAAAAGAAAAAGCAACTGAACTTCTCAAATTGATGAATCCTTATAGGGCTGAGTTAGAAGAATGCATTGATTCAGATTTCAAGAATCTTAAGAGATCATATTAA 1317 0.344 MVLGWGRRKNNKKNKGGKPNMEVVIPNQFKCPITLDLMKDPVTLSTGITYDRESVERWFDEGNITCPLTNQVVRNFDMIPNHSLRIMIQDWCVENRQNGFERIPTPRIPVSPTDVSELVFRVKECARGLDQYGCVELVQKMEKWSNESGRNKKCIVENGAISGLALAFEAFANDSIERNLIVLEVILSSLNWMFPLQLEAQESLGSKASLHCMVWFLKHQDVKGKEKAIIALKEILSFGDEKHVEALLEIEGVNELLIEFINKRVSPIITKASLRIVWYLVSSNSSFNEKLKFSFVELGLVSSILNILIDSEKSVCEKAYTILDSLLSCDFGREKAYENDLTIPLLVKKILRVSPLTTEYSVSCIWKLCKFEEKNYEGKALIEALQVGAFQKLLLVLQVGCSDETKEKATELLKLMNPYRAELEECIDSDFKNLKRSY* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0675 438 CDD RING-Ubox_PUB 29 71 IPR045210 -
Psa1g0675 438 Gene3D - 133 431 IPR011989 -
Psa1g0675 438 Pfam U-box domain 25 96 IPR003613 GO:0004842|GO:0016567
Psa1g0675 438 SUPERFAMILY ARM repeat 118 415 IPR016024 -
Psa1g0675 438 ProSiteProfiles U-box domain profile. 24 98 IPR003613 GO:0004842|GO:0016567
Psa1g0675 438 SUPERFAMILY RING/U-box 22 100 - -
Psa1g0675 438 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 438 - -
Psa1g0675 438 PANTHER WDSAM1 PROTEIN 14 438 IPR045185 GO:0061630
Psa1g0675 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 102 IPR013083 -
Psa1g0675 438 SMART Ubox_2 28 91 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0675 Psa-Chr1 43613494 43615856 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0675 5 438 U-box Gene Family AT5G37490 42.986 3.79e-110 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0675 - - gmx:100794340 665.611