Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0667 ATGAAGATTCGGTCAGTGAAAATGAGGGAGGCTCACCCTCCAAAGGGCGGCCGTGTTTCCTTCTGCTCCGTCGTATGGGACCAGAAAGCCGAACATCTCGTCACCGCCTCCTCTTCCGACGCCTCTATCTCAATTCACAACCCTCTTCTTCCCTCCGCCGCACCTAAGATTCTCCGTCACCACCGTGACGGTGTTACTGCTTTGGCTCTTAGCCCTAATTCTACTTGCCTTGCTTCTGGATCTGTCGACCATTCCGTTAAGCTCTACAAGTTTCCCGGTGGGGAGTTTGAGACAAATATTACAAGGTTCACACTTCCAATACGTTCCCTAGCATTTAACAAGAAAGGAAGCATGTTAGCAGCTGCAGGTGATGATGAGGGAATTAAGCTCATAAACACAGTTGATGGTTCCATTGCAAGGGTTCTCAAAGGGCACAAAGGACCTGTCACGGGCGTAGCTTTTGACCCCAATGGTGAATATTTAGCATCTCTGGATTCAAACGGGACCGTTATCATCTGGGAACTCCACTCAGGGAGAAACCTTCACAACCTCAAAGACATAGCTCCGGATACTGGGCTAGATCTTTCAACCATGAATGTTCTTTGTTGGAGTCCTGATGGTGAGACTTTAGCCATTCCCGGGTTGAGAAATGATGTCGTGATGTATGACAGGGACACAGCTGAGAAGTTGTTCACTCTGAGAGGGGATCACAATCAACCTATTTGTTTTTTGTGTTGGTCCCCCAATGGCAAGTACATGGCTACCTCTGGTTTAGATAAGCAGATTCTGATATGGGATGTTGATAGGAAGCAGGATATTGACAGACAGAAATTTGATGAAAGAGTGTGTTGCATGGCATGGAAGCCGATTGGGAATGCATTGACTGTTATTGATGTTAAGGGGAAGTATGGTATATGGGACAATGTTATCCCTTCGTCTATGAAGTCTCCAACCGAGGATATACCTTTGCAGGGAATGAACAGCAATGGGCTTCTTTTGTTTGACGAGGAGGATCAGGACAATAGTGTCAGTGGGAGCTTGAGTGATCTTGGTGAAAATAGTAATGGTGAGTTTGAGCCACCAGCTAGCAGGAAAAGGTTGCGCAAGCATTCCTTGAGTGAGGAAAATTTGGATGAGGATGAAGAAGGAATTGATCTATATCCAAAGGTCGAATCTCGCAAGAAAAGGAACCGGTCTGTCAAGGAAAATTTGGATAATGGGAATGTAGGATTTAGAAGCACAATGGTAACATCTAAGGCAAAAATGCAGGAGGCATTTCAATCAGGAGCCACTCCAGTGCAGCCCGGGAAAAAGCGCTTTTTATGCTACAATATGCTTGGAAGTATAACCACTGTCGATCACGATGGATACTCTCATATTGAGATTGATTTTCATGATACTGGAAGCAGTCCCCGAGTTCCATCAATGACTGACCATTTTGGATTCACTATGGCTGCATTGAATGAGAATGGAAGTGTCTTTGCAAATCCTTGCAAGGGGGAGAAAAACATGAGCACCCTCATGTATCGCCCATTTAGTACTTCGGCTAGTAATAGTGAGTGGTCCATGCGCTTTGAAGGTGAAGAAGTAAAGGTTGTTGCACTAGGTGCTTCTTGGGTGGCTGCAGTAACTAGTTTTTACTATCTTCGTATCTTTACCGAGGGTGGTATGCAGAGACATGTTATATCGCTAGATGGGCCAGTGGTGACTGCATCAGGTTTCAAGGATAATCTGGCACTAGTCACTCATGCTTTTGATTGCCTTTCCTCAAATGATCAGGTGCTAGAGTTTAGGTTATTCAACATACCACAAGGGACCCAAGTCCTTCGAGGTCGCTTGCCAATAACTCCTGGTTCCTCTCTATGTTGGTTTGGATATAGTGAAGAGGGCCAATTGTGTTCTTACGATTCCAAGGGTGTGCTAAGATTATATACAAGCCAATTTGGTGGTAGCTGGTTCCCAGTTTTCAGTGCTATTAAAGAGGAGAAGTCAGATGAAAACTATTGGATGGTTGGTTTGAATTCAAACAAGTTAGTCTGTGTTGTATGCAAAAAGCCTGAATCCTTCCCACAGGTGGTGCCTAAGCCAATTCTCACTTTAAAGGATCTTTCATTTCCACTTGCTACCTCTGATTTGGGATCTGAGGCCCTTGAAAACGAGTTTATGATGAACAACATGCATCTCTTCGAGATTCAGAAAAAGATGGAAGAAATGGATAATGCTGGTTTGGATGTTAGTTTACTTGATGATGATGCTTTCATTTTGGAAGCAGCACAAGATAGATGCATACTAAGGCTTATAGCATCCTGTTGCACCAGTGATAAACTTGTGAGAGCTACTGAACTTGTGAAGCTTTTGTCACTGGAGAAATCAATGAAAGGGGCAATAAAACTTGTCACTAATCTTAAGCTTCCAAATTTGGCAGAAAAATTCAGCAGCATATTGGAGGAAAGGCTACTTCATGAAGTTAAAAAGACCACAGAAAGCAGCCTCAAGGAAAAATCTGATTCTCTACCTAGTGGAAGCAATGCCTCATTGCCGACCGAAACATCAAAAGCATATACTGTTTCATCATCAAAATTATCTGCACCGTCGTTCATAAAGAAAAATAAAACACAAGACTCAACTACAGATGGAATGAATAAAACTACAATGGTGAATGAAAGTACAAATGTAAAGCAGACAGGAGGGAGTGAAACAAGTGATAAGAAGGGTAAGGGGGAAATGCAAGCTCCTCCTCAATCACATGGTAGTTTTATAAAGTCAGAGCCTGGTCTGGTGACAGCAAAAAGACCATCCAATCCATTTTTGAAGTCCTCAATCAAATGA 2829 0.433 MKIRSVKMREAHPPKGGRVSFCSVVWDQKAEHLVTASSSDASISIHNPLLPSAAPKILRHHRDGVTALALSPNSTCLASGSVDHSVKLYKFPGGEFETNITRFTLPIRSLAFNKKGSMLAAAGDDEGIKLINTVDGSIARVLKGHKGPVTGVAFDPNGEYLASLDSNGTVIIWELHSGRNLHNLKDIAPDTGLDLSTMNVLCWSPDGETLAIPGLRNDVVMYDRDTAEKLFTLRGDHNQPICFLCWSPNGKYMATSGLDKQILIWDVDRKQDIDRQKFDERVCCMAWKPIGNALTVIDVKGKYGIWDNVIPSSMKSPTEDIPLQGMNSNGLLLFDEEDQDNSVSGSLSDLGENSNGEFEPPASRKRLRKHSLSEENLDEDEEGIDLYPKVESRKKRNRSVKENLDNGNVGFRSTMVTSKAKMQEAFQSGATPVQPGKKRFLCYNMLGSITTVDHDGYSHIEIDFHDTGSSPRVPSMTDHFGFTMAALNENGSVFANPCKGEKNMSTLMYRPFSTSASNSEWSMRFEGEEVKVVALGASWVAAVTSFYYLRIFTEGGMQRHVISLDGPVVTASGFKDNLALVTHAFDCLSSNDQVLEFRLFNIPQGTQVLRGRLPITPGSSLCWFGYSEEGQLCSYDSKGVLRLYTSQFGGSWFPVFSAIKEEKSDENYWMVGLNSNKLVCVVCKKPESFPQVVPKPILTLKDLSFPLATSDLGSEALENEFMMNNMHLFEIQKKMEEMDNAGLDVSLLDDDAFILEAAQDRCILRLIASCCTSDKLVRATELVKLLSLEKSMKGAIKLVTNLKLPNLAEKFSSILEERLLHEVKKTTESSLKEKSDSLPSGSNASLPTETSKAYTVSSSKLSAPSFIKKNKTQDSTTDGMNKTTMVNESTNVKQTGGSETSDKKGKGEMQAPPQSHGSFIKSEPGLVTAKRPSNPFLKSSIK* 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0667 942 MobiDBLite consensus disorder prediction 359 376 - -
Psa1g0667 942 Pfam Minichromosome loss protein, Mcl1, middle region 425 707 IPR022100 -
Psa1g0667 942 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 268 - -
Psa1g0667 942 MobiDBLite consensus disorder prediction 386 402 - -
Psa1g0667 942 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 907 - -
Psa1g0667 942 MobiDBLite consensus disorder prediction 342 403 - -
Psa1g0667 942 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Psa1g0667 942 MobiDBLite consensus disorder prediction 867 942 - -
Psa1g0667 942 MobiDBLite consensus disorder prediction 833 850 - -
Psa1g0667 942 MobiDBLite consensus disorder prediction 867 898 - -
Psa1g0667 942 Pfam WD domain, G-beta repeat 140 173 IPR001680 GO:0005515
Psa1g0667 942 Pfam WD domain, G-beta repeat 57 89 IPR001680 GO:0005515
Psa1g0667 942 Gene3D - 191 344 IPR015943 GO:0005515
Psa1g0667 942 ProSitePatterns Trp-Asp (WD) repeats signature. 253 267 IPR019775 -
Psa1g0667 942 SUPERFAMILY WD40 repeat-like 19 307 IPR036322 GO:0005515
Psa1g0667 942 SMART WD40_4 226 266 IPR001680 GO:0005515
Psa1g0667 942 SMART WD40_4 269 307 IPR001680 GO:0005515
Psa1g0667 942 SMART WD40_4 7 47 IPR001680 GO:0005515
Psa1g0667 942 SMART WD40_4 93 132 IPR001680 GO:0005515
Psa1g0667 942 SMART WD40_4 135 174 IPR001680 GO:0005515
Psa1g0667 942 SMART WD40_4 51 90 IPR001680 GO:0005515
Psa1g0667 942 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Psa1g0667 942 CDD WD40 61 310 - -
Psa1g0667 942 ProSitePatterns Trp-Asp (WD) repeats signature. 161 175 IPR019775 -
Psa1g0667 942 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 58 90 - -
Psa1g0667 942 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 275 IPR001680 GO:0005515
Psa1g0667 942 Pfam Anaphase-promoting complex subunit 4 WD40 domain 201 288 IPR024977 -
Psa1g0667 942 Gene3D - 2 190 IPR015943 GO:0005515
Psa1g0667 942 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 99 IPR001680 GO:0005515
Psa1g0667 942 MobiDBLite consensus disorder prediction 826 850 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0667 59 269 U-box Gene Family AT2G33340 21.963 7.12e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0667 K11274 - gmx:100809300 1405.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0667 1 41787364 41792445 Psa1g0667 1 41787364 41792445 ECH