Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0639 ATGGATGGAAACAAAGACGATGCATTGAAATCCTTCAAAATCGGTAAAGAAGCGTTGCAAAACGGCGATCGGAATCGCGCTTTGAAGTTTCTTAACAAAGCTCGCCGCCTCGATCCCGCCCTTCCCGTTGACGATCTCTTGTCCACCATACAAACAGATGAAGGGGATCCTCCTCCTCCAGTAGCTGCCCCCTCCGATCAACCTTCCATTCGTCGAAGGTCTTCCGCTCCGGCTCCGGCGCCAGGGCCTTCGACAACTTCCTCGATATCATATAGTCAGGAACAAATTTCAATTATAAGAGAAATTAAGAGGAAGAAGAATTATTACGATATTTTAGGGTTGGAGAAGAGTTGCACTGTGGATGATGTCAGGAAATCTTATAGGAAGCTCTCTTTGAAGGTTCATCCTGACAAGAACAAGGCCCCTGGAGCCGAGGACGCATTTAAGTTGGTGTCCAAGGCTTTTCAGTGTCTTGGTAATGAGGAGAGTAAGAGAAAGTATGATGTTTCTGGAGAGGATGAAGTGGTTTACGAAAGGCGCACAGCTAGACCGGCTTCTGCCAGAGGTTTTAATGGTTACTATGATGCTGATGTTGATGCTGAAGAAATATTTAGGAATTTCTTCTTTGGAGGAATGGCGCCTGCTGCTAATTTCGGCGGGTTTAGTTTTGGAGGGCCGGGGATGGCTCATAGACAGCCAGCTGCTGATAATAGGTCTGGTGGATTCAATGTCCGAGCTTTGATTCAGGTGCTTCCTGTGCTTCTCATTTTGCTGATTAACTTTTTGCCTTCATCGGATCCTGTGTACACTCTTTCGCAAAACTATCCCTATGAACACCGGCTTACTACACCTAAGGGTGTTAACTACTATGTTAAGTCCACAAAGTTTGAACAAGATTATCCCTTGGATAGCCGCGAACGTCTTACAATTGAGGAAAGAGTTGAGAGAGAATACTTTGGTATTCTTCGCCAGAATTGTCAGTTTGAGATCCAGCGACGCCAGTGGGGATATATCAGGGAAACGCCTCACTGTGATATGCTAAGGAAGTATGATTCAGTCCGTTGA 1065 0.4573 MDGNKDDALKSFKIGKEALQNGDRNRALKFLNKARRLDPALPVDDLLSTIQTDEGDPPPPVAAPSDQPSIRRRSSAPAPAPGPSTTSSISYSQEQISIIREIKRKKNYYDILGLEKSCTVDDVRKSYRKLSLKVHPDKNKAPGAEDAFKLVSKAFQCLGNEESKRKYDVSGEDEVVYERRTARPASARGFNGYYDADVDAEEIFRNFFFGGMAPAANFGGFSFGGPGMAHRQPAADNRSGGFNVRALIQVLPVLLILLINFLPSSDPVYTLSQNYPYEHRLTTPKGVNYYVKSTKFEQDYPLDSRERLTIEERVEREYFGILRQNCQFEIQRRQWGYIRETPHCDMLRKYDSVR* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0639 354 MobiDBLite consensus disorder prediction 44 91 - -
Psa1g0639 354 Pfam DnaJ domain 107 168 IPR001623 -
Psa1g0639 354 PRINTS DnaJ domain signature 109 127 IPR001623 -
Psa1g0639 354 PRINTS DnaJ domain signature 127 142 IPR001623 -
Psa1g0639 354 PRINTS DnaJ domain signature 143 163 IPR001623 -
Psa1g0639 354 SMART dnaj_3 106 163 IPR001623 -
Psa1g0639 354 PANTHER - 1 352 - -
Psa1g0639 354 ProSiteProfiles dnaJ domain profile. 107 171 IPR001623 -
Psa1g0639 354 CDD DnaJ 107 160 IPR001623 -
Psa1g0639 354 Pfam Domain of unknown function (DUF1977) 263 334 IPR015399 -
Psa1g0639 354 ProSitePatterns Nt-dnaJ domain signature. 148 167 IPR018253 -
Psa1g0639 354 Gene3D DnaJ domain 103 218 IPR036869 -
Psa1g0639 354 PANTHER AT29763P-RELATED 1 352 - -
Psa1g0639 354 SUPERFAMILY Chaperone J-domain 58 167 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0639 Psa-Chr1 39787127 39789264 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0639 102 179 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.366 2.95e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0639 K09518 - gmx:100793797 511.146