Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0634 ATGGCCGAAGAAGACCTCGACCACCACAATTCACCCGAGCACGAGGACCAAATTAATGACAACAATAGGAAAAAGAAGCACCGCAAGAGGAAAAGATCTCGTAAATCAGAACAGGAAGTTGAAATAGAACAAGAGAATAACGAAACCGCAGAATCTGAGGAGGAGAAGAATGATGAACTGCAACACGAAGAAGAACACGGTGATGACGTCGAAGAAGAAGAGAATAAAGTGGAGACCGCCGTGTCGTCTGGAATTATGAGCACCGAGACATTTTCGTCTCTAGGATTATCTCAACCTACTTCTAAGTCTATTACTGATATGAGCTTCACCCGAATGACTCAGATTCAAGCGAAAGCTATTCCGCCACTATTGATGGGAAAAGATGTTCTTGGTGCTGCAAGGACAGGTGCTGGTAAAACACTTGCATTTTTAGTTCCAGCTGTGGAATTGTTGTACAATGTTCAGTTCACACCTCGAAATGGAACCGGTGTTGTTGTTATTTGTCCAACTCGAGAGCTTGCCATTCAGACACATGCTGTGGCAAAGGAACTACTCAAGTATCATTCGCAAACACTTGGATTGGTTATTGGGGGTTCGGGTAGAAAGGGAGAAGCTGAGCGCATTGTTAAAGGGGTAAATTTGTTGGTTGCAACACCTGGCCGTCTTCTTGACCACCTTCAGAATACAAAAGGATTCATATATAAAAACTTGATGTGTCTCATTGTTGATGAAGCAGACAGGATATTGGAAGCAAACTTTGAGGAAGAAATGAAGCAGATAATTAATATACTTCCAAAGAAAAGGCAAACAGCTTTGTTTTCAGCCACACAAACAAAGAAGGTTGAAGATCTTGCCCGCTTGTCTTTTCAGACACCTCCTGTCTATGTTGATGTAGATGATGGGAGAAAAAAGGTCACAGTTGAAGGATTGGAACAGGGCTATGTTGTTGTTCCCTGTGCCCAGCGTTTTGTTACTCTATATACATTCTTGCAGAGACATCAATCAAAAAAAGTTATGGTGTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCCGATCTTCTTAAGTTCATTGGATTAGACTGTTTAAATATTCATGGAAAACAAAAGCAGCACGCCCGGACAACTACCTTCTTCAACTTTTGCAAAGCAGAAAAGGGTATCCTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGATGTGGACTGGATTGTGCAGTATGATCCGCCTGATGAACCAAAGGAATATATCCACAGAGTTGGTAGAACTGCTCGTGGGGAAGGTGGAAAAGGAAATGCTCTACTTTTCCTAATTCCGGAAGAATTGCAATTTCTTCGCTATTTGAAGGCAGCAAAGATTCCTGTGAAAGAGTATGTATTTAATAGTAAAAAGCTTGCAAATGTACAATCGACACTGGAGAAGATGGTGGGCAAAATTTATCATTTGAACACTATGGCTAAAGAAGCATATAGGTCATATATATTGGCATATAATGCACATTCTATGAAGGAAATATTCAATGTTCACCGCCTTGATTTACAGGCTGTTGCTACTTCATTCAGTTTTACAAACCCACCAAAGATAAATCTGAACATAGATAGCAGCGCTTCAAAACATAGGAAGAAAATTCAAAAAGTGGAAGGAAGAAGTAGATGA 1665 0.4078 MAEEDLDHHNSPEHEDQINDNNRKKKHRKRKRSRKSEQEVEIEQENNETAESEEEKNDELQHEEEHGDDVEEEENKVETAVSSGIMSTETFSSLGLSQPTSKSITDMSFTRMTQIQAKAIPPLLMGKDVLGAARTGAGKTLAFLVPAVELLYNVQFTPRNGTGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSGRKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLMCLIVDEADRILEANFEEEMKQIINILPKKRQTALFSATQTKKVEDLARLSFQTPPVYVDVDDGRKKVTVEGLEQGYVVVPCAQRFVTLYTFLQRHQSKKVMVFFSSCNSVKFHADLLKFIGLDCLNIHGKQKQHARTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKIPVKEYVFNSKKLANVQSTLEKMVGKIYHLNTMAKEAYRSYILAYNAHSMKEIFNVHRLDLQAVATSFSFTNPPKINLNIDSSASKHRKKIQKVEGRSR* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0634 554 CDD DEADc_DDX18 100 297 IPR044773 GO:0003724|GO:0005524
Psa1g0634 554 MobiDBLite consensus disorder prediction 1 84 - -
Psa1g0634 554 Pfam Domain of unknown function (DUF4217) 471 531 IPR025313 -
Psa1g0634 554 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 45 534 - -
Psa1g0634 554 SMART ultradead3 108 313 IPR014001 -
Psa1g0634 554 Coils Coil 28 73 - -
Psa1g0634 554 CDD SF2_C_DEAD 310 440 - -
Psa1g0634 554 SMART DUF4217_3 470 533 IPR025313 -
Psa1g0634 554 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 241 249 IPR000629 -
Psa1g0634 554 Gene3D - 66 301 IPR027417 -
Psa1g0634 554 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 89 117 IPR014014 GO:0003724
Psa1g0634 554 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 322 469 IPR001650 -
Psa1g0634 554 SMART helicmild6 349 430 IPR001650 -
Psa1g0634 554 PANTHER RNA HELICASE 45 534 - -
Psa1g0634 554 MobiDBLite consensus disorder prediction 1 22 - -
Psa1g0634 554 Pfam Helicase conserved C-terminal domain 324 429 IPR001650 -
Psa1g0634 554 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 120 295 IPR014001 -
Psa1g0634 554 Gene3D - 309 550 IPR027417 -
Psa1g0634 554 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 451 IPR027417 -
Psa1g0634 554 Pfam DEAD/DEAH box helicase 113 284 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0634 Psa-Chr1 39334041 39340396 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0634 73 449 Eukaryotic Initiation Factors Gene Family AT3G19760 26.455 4.66e-44 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0634 K13179 - gmx:100798290 868.611