Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0625 ATGACAGGAGAAACAGTGAATCCAAAAGCATACCCTCTGGCTGATGCACAGCTTACAATAACAATAATGGATCTTGTTCAACAAGCTGCTAATTACAAACAGCTCAAAAAGGGTGCCAACGAAGCTACAAAGACACTTAACAGAGGCATTTCTGAGTTTGTTGTCATGGCAGCAGATGCTGAACCCCTTGAGATTCTTCTCCATCTTCCTCTACTTGCCGAGGATAAGAATGTTCCGTATGTATTCGTGACATCAAAACAAGCACTAGGACGAGCATGTGGTGTCACCCGGCCGGTGATTGCATGTTCTGTGACAACTAATGAGGGAAGTCAATTGAAATCTCAAATCCAACAACTAAAGGATGCTATTGAGAAACTATTAATATGA 387 0.4186 MTGETVNPKAYPLADAQLTITIMDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVTSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0625 128 PRINTS High mobility group-like nuclear protein signature 8 21 IPR002415 GO:0003723|GO:0005730
Psa1g0625 128 PRINTS High mobility group-like nuclear protein signature 21 36 IPR002415 GO:0003723|GO:0005730
Psa1g0625 128 PRINTS High mobility group-like nuclear protein signature 38 48 IPR002415 GO:0003723|GO:0005730
Psa1g0625 128 PRINTS High mobility group-like nuclear protein signature 82 94 IPR002415 GO:0003723|GO:0005730
Psa1g0625 128 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 4 128 - -
Psa1g0625 128 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 22 111 IPR004038 -
Psa1g0625 128 Gene3D - 1 128 IPR029064 -
Psa1g0625 128 PANTHER NHP2-LIKE PROTEIN 1 4 128 - -
Psa1g0625 128 ProSitePatterns Ribosomal protein L7Ae signature. 73 90 IPR004037 GO:0042254|GO:1990904
Psa1g0625 128 PRINTS Ribosomal protein L7A/RS6 family signature 35 49 IPR018492 -
Psa1g0625 128 PRINTS Ribosomal protein L7A/RS6 family signature 54 67 IPR018492 -
Psa1g0625 128 PRINTS Ribosomal protein L7A/RS6 family signature 70 80 IPR018492 -
Psa1g0625 128 PRINTS Ribosomal protein L7A/RS6 family signature 80 94 IPR018492 -
Psa1g0625 128 Coils Coil 109 128 - -
Psa1g0625 128 SUPERFAMILY L30e-like 6 126 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0625 Psa-Chr1 38991528 38993312 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0625 35 124 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 28.889 3.66e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0625 K12845 - jre:109010760 233.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0625 1 38991528 38993312 Psa1g0625 1 38991528 38993312 ECH