Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0621 ATGGAACCCATGGACATAGTTGCAAAATCAAAGGAAGATGCGTCGCTTCCTAAAGCCACGATGACGAAAATTATAAAAGAGATGTTACCACCCGATGTTCGAGTTGCAAGAGATACACAGGATTTGTTGATTGAATGCTGTGTAGAGTTCATAAACCTTATCTCATCAGAGTCAAACGAAGTATGTAACAGAGAGGAAAGAAGGACGATTGCACCTGAGCATGTGTTGAAGGCTTTAGGGGTTCTTGGATTTGGCGAGTACATTGAGGAGGTTTATGCAGCATATGAACAGCACAAAATGGAGACAGTGCAGGACTCTATAAAAGGTGCCAAGTGGAGTGGCGCAGCTGAGATGACAGAGGAACAGGCATTAGCAGAGCAGCAAAGGATGTTTGCAGAGGCACGTGCTAGAATGAATGGCAAGCATCTCTGA 432 0.4444 MEPMDIVAKSKEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLISSESNEVCNREERRTIAPEHVLKALGVLGFGEYIEEVYAAYEQHKMETVQDSIKGAKWSGAAEMTEEQALAEQQRMFAEARARMNGKHL* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0621 143 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Psa1g0621 143 SUPERFAMILY Histone-fold 12 141 IPR009072 GO:0046982
Psa1g0621 143 PANTHER PROTEIN DR1 HOMOLOG 1 141 IPR044255 -
Psa1g0621 143 Coils Coil 115 135 - -
Psa1g0621 143 Gene3D Histone, subunit A 4 142 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0621 Psa-Chr1 38756866 38759569 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0621 1 140 CCAAT-DR1 Transcription Factor Family AT5G23090 84.286 2.83e-88 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Psa1g0621 CBFD_NFYB_HMF 2e-21 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0621 K21751 - gmx:547635 263.077