Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0589 ATTTAGTTTCTTCCCCCTCCAAGACGAAAGACATCGACGGCCTCCTCGCCGATGTCGGATACAAAGTCCGGTCTTCTGAGCTGCATCAAGTAGCTCATAATATCGAACGGCTGGAGAACGCGATTGTGAATTCATCCAGCGACATTTCTCAATTCGCTTCGGATACTGTCCACTACGATCCCTCCGATATTGGCAATTGGGTGGACAATCTTCTCACTGAATTCGACCATACAGTCTCTTTACCCTATGATTTCTCTGAACTACCAGATCTCGCAGCACCACCGCTGCCGCCGTCACAAGATCAACACTACCTCCACCAATTAAAGGTGGTGACCACCGTTGAAGAAGACTCTGCAATTAAGCTAGTTCACATGCTGATGACGTGTGCGGACTCGTTGCAACGTGGCAATTTACCATTGGCTGGCTCGTTAATTGAAGGCATGCAAGGGTTGTTAGCAGAGATGAACACCAACTGCGGCATTGGAAAAGTCGCCGGGTACTTCATTGATGCATTGAACCGCCGTATCTTCGGTATAAACAATGTTATCAGTGTTTCTCTTCCGAATGAGAACGATATTCTTTACCATCACTACTACGAGGCTTGTCCTTACCTCAAATTCGCTCACTTCACAGCTAATCAAGCTATACTGGAAGCTTTCAATGGCCACGATTGTGTTCATGTTATTGATTTCAACCTCATGCACGGTCTTCAATGGCCGGCGTTGATTCAAGCTCTTGCTCTTCGTCCTGGTGGACCTCCATTTCTACGGCTAACCGGCATTGGTCCGCCGTCGCCGGATGAGCGGGACAACCTCCGCGAAATCGGGTTGCGGTTAGCCGAGCTAGCTAGATCGGTGAATGTTAGATTCGCGTTTCGTGGAGTTGCGGCTTGGCGGCTTGAGGATGTGAAGCCGTGGATGCTTCAGGTGAGTTCTAAGGAAGTTGTGGCGGTTAATTCTATATTGCAACTTCATCGTCTTCTCGGATCTGAATCTGAACCGGTTTCTTCGGGTATTGAAATGGTTTTGGGTTGGATCCGGAGTTTGAACCCGAAAATCATGACGGTTGTGGAGCAGGAAGCGAACCATAACGAGGATGGGTTCATGGAGCGGTTCACGGAGGCACTACATTATTACTCGACCGTTTTTGACTCGCTTGAAGCATGTTCGGTTGAACCGGACAAGGCTATGGCTGAGATGTTTCTGCAGAGGGAGATATGCAATGTGGTATGCTGCGAGGGGTCGGCTCGAGTTGAGCGACATGAACCACTTGTTAAGTGGAGGGAGCGGCTTGGTAAAGCCGGGTTCAGACCGCTACATTTGGGTTCGAACGCGTTTAAGCAAGCGAGTATGCTGTTGACTCTGTTTTCTGCGGAGGGTTATTGCGTGGAGGAGAACCAGGGGAGCTTGAGTTTGGGTTGGCATAGCCGCCCTCTCATTGCGGCTTCGGCTTGGCAAGCTGTGCCTTTGCCAGAGGCTGAAACACTGCGTTTCGATCATTGA 1502 0.4973 LVSSPSKTKDIDGLLADVGYKVRSSELHQVAHNIERLENAIVNSSSDISQFASDTVHYDPSDIGNWVDNLLTEFDHTVSLPYDFSELPDLAAPPLPPSQDQHYLHQLKVVTTVEEDSAIKLVHMLMTCADSLQRGNLPLAGSLIEGMQGLLAEMNTNCGIGKVAGYFIDALNRRIFGINNVISVSLPNENDILYHHYYEACPYLKFAHFTANQAILEAFNGHDCVHVIDFNLMHGLQWPALIQALALRPGGPPFLRLTGIGPPSPDERDNLREIGLRLAELARSVNVRFAFRGVAAWRLEDVKPWMLQVSSKEVVAVNSILQLHRLLGSESEPVSSGIEMVLGWIRSLNPKIMTVVEQEANHNEDGFMERFTEALHYYSTVFDSLEACSVEPDKAMAEMFLQREICNVVCCEGSARVERHEPLVKWRERLGKAGFRPLHLGSNAFKQASMLLTLFSAEGYCVEENQGSLSLGWHSRPLIAASAWQAVPLPEAETLRFDH* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0589 499 Pfam GRAS domain family 121 485 IPR005202 -
Psa1g0589 499 Gene3D - 10 74 IPR038088 -
Psa1g0589 499 PANTHER OS05G0574900 PROTEIN 8 489 - -
Psa1g0589 499 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 489 IPR005202 -
Psa1g0589 499 ProSiteProfiles GRAS family profile. 112 485 IPR005202 -
Psa1g0589 499 SMART DELLA_2 12 84 - -
Psa1g0589 499 Pfam Transcriptional regulator DELLA protein N terminal 12 77 IPR021914 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0589 Psa-Chr1 35580634 35582225 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0589 11 485 GRAS Transcription Factor Family AT1G14920 48.235 1.58e-156 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Psa1g0589 GRAS 1.4e-124 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0589 K14494 - gmx:100805968 768.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0589 1 35580634 35582225 Psa1g0589 1 35580634 35582225 ECH