Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0585 ATGGCTAAACTGTCTCAACAAAAACCTCAAAAAAACAATGCAAGTAATAACAATAACGTTAGTGCAACTAACACCAAAGTGAAAAGAACAAGGAGAAGTGTCCCAAGAGATTCTCCAATTCAACGCAGCTCAATATATAGAGGAGTCACTAGGCACAGATGGACAGGACGATATGAGGCTCATTTGTGGGACAAGAATAGTTGGAATGAATCGCAAAACAAGAAAGGACGACAAGTCTACCTCGGTGCTTATGATGATGAAGAAGCTGCTGCACATGCTTATGATCTAGCGGCATTGAAATATTGGGGTCCAGATACCATTCTTAACTTTCCGTTATGTAGTTACGAGAATCAGTTGAGAGAAATGGAGGATCAATCAAGGGAGGAGTACATTGGATCATTAAGGAGGAAAAGCAGTGGTTTTTCTCGCGGAGTTTCTAAATATAGAGGCGTGGCGAGACATCATCATAATGGAAGGTGGGAGGCTCGTATTGGGAGGGTTTTTGGCAACAAATATCTTTATCTTGGAACATATGCTACGCAAGAAGAAGCAGCCACAGCATACGATATGGCAGCTATTGAATATCGTGGACTCAATGCTGTCACCAATTTTGATCTCAGCCGTTATATTAAGTGGCTTAAACCTAATCACAGTGATAACAACAACAAACTTATTCATAATTCTAGTAATAACTTAATCTCTGACACCAAATTCATCCCAAACATGATGATGAGTAATCAAAATGAGTCATTTGGAGGAGAAGAAGAACTAGTACAGCCTCGGCCAGCTGGCACTACGTCGGCATTAGGTCTTTTGCTTCAATCGTCAAAGTTTAAGGAGATGATGGAAATGACAACTGCTGCTGATTTGTCAACACCAGAAAACTCATATACATTTCCTGATCACATTCAGACATACTTTGAGTCTTCCACTGAAGATGAACATGAACATGGGGATGATTTATTCAATGTGCCCTCTTTATTCCATTCTCTTGACTTTGATCACGGCTTCAAGGTCTAG 1020 0.4029 MAKLSQQKPQKNNASNNNNVSATNTKVKRTRRSVPRDSPIQRSSIYRGVTRHRWTGRYEAHLWDKNSWNESQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGPDTILNFPLCSYENQLREMEDQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNHSDNNNKLIHNSSNNLISDTKFIPNMMMSNQNESFGGEEELVQPRPAGTTSALGLLLQSSKFKEMMEMTTAADLSTPENSYTFPDHIQTYFESSTEDEHEHGDDLFNVPSLFHSLDFDHGFKV* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0585 339 SMART rav1_2 45 117 IPR001471 GO:0003700|GO:0006355
Psa1g0585 339 SMART rav1_2 147 211 IPR001471 GO:0003700|GO:0006355
Psa1g0585 339 Pfam AP2 domain 45 103 IPR001471 GO:0003700|GO:0006355
Psa1g0585 339 Pfam AP2 domain 146 197 IPR001471 GO:0003700|GO:0006355
Psa1g0585 339 MobiDBLite consensus disorder prediction 1 42 - -
Psa1g0585 339 SUPERFAMILY DNA-binding domain 146 207 IPR016177 GO:0003677
Psa1g0585 339 CDD AP2 146 207 IPR001471 GO:0003700|GO:0006355
Psa1g0585 339 MobiDBLite consensus disorder prediction 1 28 - -
Psa1g0585 339 ProSiteProfiles AP2/ERF domain profile. 147 205 IPR001471 GO:0003700|GO:0006355
Psa1g0585 339 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 322 - -
Psa1g0585 339 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1 322 - -
Psa1g0585 339 Gene3D AP2/ERF domain 146 207 IPR036955 GO:0003700|GO:0006355
Psa1g0585 339 Gene3D AP2/ERF domain 45 113 IPR036955 GO:0003700|GO:0006355
Psa1g0585 339 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Psa1g0585 339 PRINTS Ethylene responsive element binding protein signature 187 207 IPR001471 GO:0003700|GO:0006355
Psa1g0585 339 ProSiteProfiles AP2/ERF domain profile. 45 111 IPR001471 GO:0003700|GO:0006355
Psa1g0585 339 SUPERFAMILY DNA-binding domain 44 112 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0585 Psa-Chr1 34775654 34777238 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0585 41 209 AP2-EREBP Transcription Factor Family AT5G57390 72.781 1.25e-89 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Psa1g0585 AP2 2.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0585 K09285 - gmx:100795869 458.373