Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0578 ATGAAGGAGAAGAGAGTTAGTAATATTTATATGTTGGATGACTTGGACTCTAGATTGTCCTCATCTTCTGATGCTGGAGTTAAAACATTTAGTATTGATAAATTTAGCCATGGTGCCCATGGAAGCAGTAAAACCTCAAGGTCTTTCAAAAGAGGAATGAGAAAAGGATCTGAAGGACTGAAGTCAATTGGCCGATCATTTGGGTTTGGAGTATCTAAGGCTGTGTTCCCAGAAGATCTTCAAGTTTCAGAAAAGAAGATATTTGATCCTCAAGACAAATTTTTACTATTCTGGAATAAGCTTTTTGTTATCTCTTGTATTTTGGCTGTGTCTGTGGACCCATTGTTTTTTTATCTTCCTGTCATCAATGATTCATTACGCTGTCTTGGTATAGACCGAAAGTTGGCAGTTATAGTTACCACCTTGAGGACATTTATCGATGCTTTCTATCTTATACACATGGCTCTCCAATTCCGTACTGCTTATATTGCTCCATCATCTCGTGTTTTTGGACGAGGTGAGCTTGTGATAGATCCGGCACAGATAGCAAAGCGATACTTACGGCGGTATTTCATCATTGATTTCTTATCAGTATTGCCCTTACCACAGATTGTGGTGTGGAGATTTCTTCAGAGTTCAAAAGGTTCAGATGTTGTCACAACAAAGCAGGCCTTACTTTTCATTATATTGCTTCAGTACATTCCAAGATTTCTCCGTATGTTACCATTGACTTCTGAACTTAAGAGAACAGCCGGTGTCTTTGCTGAAACTGCTTGGGCTGGTGCTGCATATTATTTGCTATTATTCATGCTTGCCAGTCATATAGTTGGGTCGTTTTGGTACTTATTAGCTGTTGAGCGCAATGACTTTTGCTGGAAGAAGGCTTGTAGTGACAATGGGTACAACAAGAAATTCTTGTATTGTGGCAACCAATACATGGAAGGTTATAGTTCCTGGCAGAATAAAAGTGAAGCTATTCTTACATCACAGTGCTCTGCAGATAATGAAAGTCCACCTTTTGACTATGGGATATTTACACAAGCCTTGAAATCTGGCATTGTTTCATCTAACAAGTTCTTGTCCAAGTACTGTTACTGTTTATGGTGGGGGCTTCAGAACTTGAGTACACTTGGCCAGGGGCTTCAAACTAGCACCTACGTTGGGGAGGTTATGTTCTCAATAGCATTAGCCATAGCTGGCCTTATCCTCTTTGCACTTCTGATTGGTAACATGCAGACATATCTTCAGTCTCTTACCATTAGACTTGAAGAAATGAGAGTCAAGAGACGTGATTCAGAACAGTGGATGCATCATCGTCTGCTACCACAAGAGCTTAGAGAGCGCGTGAGACGATATGATCAATATAAGTGGTTGGCGACACGTGGTGTAGATGAAGAAAATTTGGTTCAGAGTCTTCCAAAGGATCTTCAAAGAGACATTAAGCGTCACCTTTGTCTGGCTTTAGTTAGAAGGGTTCCTTTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATATGTGAGAGACTGAAGCCATGTTTATTTACAGAGAGTACTTACATTGTGCGGGAAGGAGATCCGGTTGATGAGATGCTTTTCATCATACGTGGTCGGCTTGAGAGTGTCACTACAGATGGTGGGAGGAGTGGATTTTTTAATCGCAGTTTCCTAAAAGAGGCAGACTTCTGTGGCGAGGAGCTTTTAACGTGGGCGCTTGATCCCAAATCTGGCTCTAACCTCCCATCTTCTACTCGAACAGTTAGGGCTTTAATGGAAGTTGAGGCTTTTGCATTAACTGCCGAAGAGTTGAAGTTTGTCGCTAGTCAATTTAGGCGCCTTCACAGTAGACAGGTTCAACACACCTTCCGCTTTTACTCCCAACAATGGAGAACTTGGGCTGCATGCTTTATTCAAGCAGCTTGGCGCAGGTATTCCAAACGAAAAATTATGGAGCTTCGTCGAAAGGAAGAACCTGAGGAGTCAGAACAAACTCGTAGCAATGCTGGTGGCAGCTCATACAGTCTCGGTGCCACCTTATTGGCCTCAAGATTTGCTGCAAATGCTCTTCGTGGTGTACATCGCAATCGTATTGCTAAGAGTGCCGGGAACTTGGTGAAATTACAGAAACCTTCCGAGCCCGACTTTACTGCTGATGATATGTAA 2163 0.4202 MKEKRVSNIYMLDDLDSRLSSSSDAGVKTFSIDKFSHGAHGSSKTSRSFKRGMRKGSEGLKSIGRSFGFGVSKAVFPEDLQVSEKKIFDPQDKFLLFWNKLFVISCILAVSVDPLFFYLPVINDSLRCLGIDRKLAVIVTTLRTFIDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIIDFLSVLPLPQIVVWRFLQSSKGSDVVTTKQALLFIILLQYIPRFLRMLPLTSELKRTAGVFAETAWAGAAYYLLLFMLASHIVGSFWYLLAVERNDFCWKKACSDNGYNKKFLYCGNQYMEGYSSWQNKSEAILTSQCSADNESPPFDYGIFTQALKSGIVSSNKFLSKYCYCLWWGLQNLSTLGQGLQTSTYVGEVMFSIALAIAGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLATRGVDEENLVQSLPKDLQRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTESTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSFLKEADFCGEELLTWALDPKSGSNLPSSTRTVRALMEVEAFALTAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKIMELRRKEEPEESEQTRSNAGGSSYSLGATLLASRFAANALRGVHRNRIAKSAGNLVKLQKPSEPDFTADDM* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0578 720 Gene3D - 99 419 - -
Psa1g0578 720 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 8 717 - -
Psa1g0578 720 SMART cnmp_10 494 625 IPR000595 -
Psa1g0578 720 Gene3D Jelly Rolls 492 612 IPR014710 -
Psa1g0578 720 Pfam Cyclic nucleotide-binding domain 516 605 IPR000595 -
Psa1g0578 720 Pfam Ion transport protein 97 420 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Psa1g0578 720 Gene3D Helix hairpin bin 422 485 - -
Psa1g0578 720 ProSiteProfiles cAMP/cGMP binding motif profile. 494 578 IPR000595 -
Psa1g0578 720 ProSiteProfiles IQ motif profile. 630 659 IPR000048 GO:0005515
Psa1g0578 720 CDD CAP_ED 494 625 IPR000595 -
Psa1g0578 720 SUPERFAMILY Voltage-gated potassium channels 89 416 - -
Psa1g0578 720 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 8 717 - -
Psa1g0578 720 SUPERFAMILY cAMP-binding domain-like 423 614 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0578 Psa-Chr1 34669235 34680554 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0578 18 718 Ion Channels AT5G57940 79.066 0.0 1140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0578 K05391 - gmx:100820202 1272.69