Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0566 ATGAATACTCTGAGCAAACAAAACAATAGAACCAAAGACGGAGAGGATGAAACCAATAGAGCTCATTCAACAATGTTCGAAAGCGAACATAAGCATTATAACAAGGTCAAAAGCAATGAATGTGAAGATGATGACCATGAAAAGAAAGTGAAAAAGAAGAAGAAACTAATTGAGGGAGGCAGACTTGACCAAGGAAAGACGAAAAAGAACAAGAATAAACCAAGTCACAAAAGAAAAAGTAACAAGGACAATGAGTTTAATAGCAATCAAGGTGAAGTTAATGATCAAGGCAAACCGATGAAGAAAAAAAAGGAAGCAAAGGCGATTACAACGGATGAATCTCCTAAACCCAAACGGGTAACTTTTTCCAATCAAGTGGAGGAGTTTTGTTGTGATGGCTTAGTGCGTGGGAAACGTTTTACACCCGAAGAAGATGAGAAAATCAAAGCAGCTGTTTATGATTATATAGATTCTCATGGTTTGGGAGAGGAAGGTGTAGATATGATTCTTCATATCAAATCCAACCCTTCAGTTAGAGGTTGTTGGAAGGTTATTGCACAAGCCCTACCTCATAGGCCTCCCGATAGTGTGTCTAAACGCGGTCATGTTTTGTTTGAAAACAATGTGGAATTTGAGTGGACACCTGATGAGCGTGAATTTATATTGAAGGCTTACGAGCAACATGGACCTGATTGGAGGGCAATAGCTGATGCTTTGGGTAAAAGTCGAAATCAGGTCAAAGATTTGTGGCGCAGATTAAAGTGTACTGGGAGAAATAAAGGACATTGGTCCCAAGAGGAGTATCAAACTTTATTTAATTTAGTAAACCTCGATCTCCGTGCGAGGGCTTTAGAGCCTTATAGAAAATCCCAACATGGTATGTTGAGAGATAATATTTGTTGGGAAGCAATTAGTCAGAAGTTGAAAACCCGAGACAGTGCAATTTGCTGCAAGAAGTGGTATGGACAGTTGATATCACCAATGACTGCTAGTGGTGAATGGTTAGAATCCGATGACTTCCGCTTGATAGATGCTTTATATGCTTTGGATGCTTGCTGCATGGAAGAGGTAGACTGGGACAATCTAATTGAGTATAGGTCTGGTGATGCATGCAGACAACGATGGGATCAAATGGTCCAACATATTGGCAATCGTGCAGGGAAGTCATTTATTGAGCAGGTTGAAATTCTTGCAAAGAGATTCTGTCCAGACTTATTGGAGGCAAGAGAGGCTTTTGACAACAAGCCTGTGATTTGTTGA 1260 0.4008 MNTLSKQNNRTKDGEDETNRAHSTMFESEHKHYNKVKSNECEDDDHEKKVKKKKKLIEGGRLDQGKTKKNKNKPSHKRKSNKDNEFNSNQGEVNDQGKPMKKKKEAKAITTDESPKPKRVTFSNQVEEFCCDGLVRGKRFTPEEDEKIKAAVYDYIDSHGLGEEGVDMILHIKSNPSVRGCWKVIAQALPHRPPDSVSKRGHVLFENNVEFEWTPDEREFILKAYEQHGPDWRAIADALGKSRNQVKDLWRRLKCTGRNKGHWSQEEYQTLFNLVNLDLRARALEPYRKSQHGMLRDNICWEAISQKLKTRDSAICCKKWYGQLISPMTASGEWLESDDFRLIDALYALDACCMEEVDWDNLIEYRSGDACRQRWDQMVQHIGNRAGKSFIEQVEILAKRFCPDLLEAREAFDNKPVIC* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0566 419 ProSiteProfiles Myb-like domain profile. 326 379 IPR001005 -
Psa1g0566 419 SUPERFAMILY Homeodomain-like 184 266 IPR009057 -
Psa1g0566 419 SMART sant 330 381 IPR001005 -
Psa1g0566 419 SMART sant 136 207 IPR001005 -
Psa1g0566 419 SMART sant 259 326 IPR001005 -
Psa1g0566 419 SMART sant 209 256 IPR001005 -
Psa1g0566 419 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 213 258 IPR017930 -
Psa1g0566 419 CDD SANT 212 254 IPR001005 -
Psa1g0566 419 Gene3D - 214 253 - -
Psa1g0566 419 ProSiteProfiles Myb-like domain profile. 255 324 IPR001005 -
Psa1g0566 419 MobiDBLite consensus disorder prediction 1 119 - -
Psa1g0566 419 Gene3D - 254 326 - -
Psa1g0566 419 Gene3D - 134 210 - -
Psa1g0566 419 Pfam Myb-like DNA-binding domain 213 271 - -
Psa1g0566 419 ProSiteProfiles Myb-like domain profile. 213 254 IPR001005 -
Psa1g0566 419 PANTHER GB|AAC33480.1 7 418 - -
Psa1g0566 419 MobiDBLite consensus disorder prediction 96 114 - -
Psa1g0566 419 MobiDBLite consensus disorder prediction 9 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0566 Psa-Chr1 34071197 34076247 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0566 212 380 MYB Transcription Factor Family AT4G32730 27.684 4.68e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa1g0566 Myb_DNA-bind_6 2.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0566 - - cam:101514362 516.924