Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0564 ATGTCAACCACCACCCAAGTGGTGGTTCTCGACAACGGCGGAGGTCTAATCAAAGCCGGCTTCGGCGGCGAACGCGACCCATCCGCCATTCTCCCGAACTGTCTCCACAAACCCCTCGCCTCCAAAAAATGGCTCCACCCAAATCCCCTAAACACCCCCGCCTCCGCCGAACAAGACCTCACCTCCGCCTCCGTCCGCCGTCCCATGGATCGCGGCTACCTGATAAACCCCGACCTCCAACGCGAAATCTGGTCCCACCTCTTCACCTCAATCCTCCGCATAAACCCTTCGCAATCCTCTCTCCTCCTCACAGAACCCCTCTTCTCTCTCCCCTCAATTCAACACTCCCTCGACGAACTCGTCTTCGAAGATTTCAACTTCACCTCCCTCTACGTCGCCGACTCCCCTTCCTTAGTTCATCTCTACGAAACCAGCCGCAGCCCCAACGGACTTCTCTCAAAAGCCCAATGCAGTCTCGTCGTCGATTGCGGTTTCTCCTTCACACATGCTTCACCTGTATTCCAAAACTTCACTCTTAACTACGCTGTTAAGAGAATCGATTTAGGTGGTAAAGCCCTAACGAATTACCTCAAGGAGCTTATCTCGTTTCGCTCTGTTAATGTCATGGATGAAACCTTCATCATTGATGATGTAAAGGAGAATCTCTGCTTTGTTTCCGTCGATGTCCCTCGACACCTTAACATTGCTAGAAAGAGTGGAAAAGAGAATCTTCTGAGGTGTACTTATGTTCTTCCTGATGGTGTCTCGCACACAAAAGGGTTTGTTAAATATCCAGAACAAGCTAACAGGTATCTTTCTGATGGTAAGGAAATGAAGGAGGATGTGGATGATCACGAGGAAATTCTCCAACAACAACATGAGAACAATAGACAGAAAGTTGATTTGACGAAAAATGAATTTGACTTGACCAATGAACGGTTTCTTGTCCCGGAGATGATTTTCCGTCCAGCTGATTTGGGAATGAACCAGGCTGGATTACCGGATTGTATTGTGCGAGCAGTAAATGCCTGCCATCCTCACCTCCATCCGGTACTCTATGAAAGCATCATTTTAACTGGTGGAAGCACCTTGTTTCCTCATTTTGCTGAGAGACTAGAGAAGGAGCTTCGGCCTCTAGTTCCTGATGATTATGATGTGAAGATAACTACACAAGAAGATCCCCTATTAGGTGTTTGGCGTGGAGGGTCTCTCCTGGCATCGAGTCCAGATTTTGATTCAATGTGCGTGACTAAGGCTGAGTATGAGGAGCTTGGTTCTGCTAGATGTCGCAAGAGATTTTTTCATTGA 1308 0.4809 MSTTTQVVVLDNGGGLIKAGFGGERDPSAILPNCLHKPLASKKWLHPNPLNTPASAEQDLTSASVRRPMDRGYLINPDLQREIWSHLFTSILRINPSQSSLLLTEPLFSLPSIQHSLDELVFEDFNFTSLYVADSPSLVHLYETSRSPNGLLSKAQCSLVVDCGFSFTHASPVFQNFTLNYAVKRIDLGGKALTNYLKELISFRSVNVMDETFIIDDVKENLCFVSVDVPRHLNIARKSGKENLLRCTYVLPDGVSHTKGFVKYPEQANRYLSDGKEMKEDVDDHEEILQQQHENNRQKVDLTKNEFDLTNERFLVPEMIFRPADLGMNQAGLPDCIVRAVNACHPHLHPVLYESIILTGGSTLFPHFAERLEKELRPLVPDDYDVKITTQEDPLLGVWRGGSLLASSPDFDSMCVTKAEYEELGSARCRKRFFH* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0564 435 CDD NBD_sugar-kinase_HSP70_actin 8 200 - -
Psa1g0564 435 PANTHER ACTIN-RELATED PROTEIN 6 8 431 IPR030054 GO:0005634|GO:0006338
Psa1g0564 435 SUPERFAMILY Actin-like ATPase domain 4 139 IPR043129 -
Psa1g0564 435 Pfam Actin 4 434 IPR004000 -
Psa1g0564 435 Gene3D - 8 426 - -
Psa1g0564 435 Gene3D Actin; Chain A, domain 2 35 68 - -
Psa1g0564 435 Gene3D - 133 400 - -
Psa1g0564 435 PANTHER ACTIN 8 431 IPR004000 -
Psa1g0564 435 SMART actin_3 5 434 IPR004000 -
Psa1g0564 435 Gene3D Actin; Chain A, domain 4 194 332 - -
Psa1g0564 435 SUPERFAMILY Actin-like ATPase domain 156 434 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0564 Psa-Chr1 33999611 34002545 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0564 6 434 Cytoskeleton Gene Families AT3G18780 28.176 2.91e-60 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0564 K11662 - gmx:100819827 706.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0564 1 33999611 34002545 Psa1g0564 1 33999611 34002545 ECH