Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0537 ATGCCAGATTTGGGGAACCGTCCTCTCCCGCCCATGCCCTGCTCCCCCGTCAAGCCCACTGACGCCGCCGATGATTCAGCTGCAGTCGAAGCACTACCCAGTGATTTTGGTTCCGATAATGGCGTTCATGCTCGGGTTTTGAAGAGGAGTCGCGGTTCTCTCCGGAAGACAGGCAATGGAAAGAGTTTGTGGGATCGCCTTAAGGATCCTCAATCTCTCCCGTTTCTCGTCGGCGCTCCAAAGATGGTTGAATGCTGTTTCTGCCACCATTCTGTGTGTCCTGGGGAGGATCTGCTATGTTCTGTCTGGGGATGTGGCTCACGCTATCATAAGGAATGTGCAAAAGAAGTCAGTGGGGTTTCAAATCTGAAAAAGTTCAAGTGTCCACAGCATGCGTGCTTCATTTGCAAGCAGAAGAAGCAGTTGCGGTGTGTGCGTTGCACGACGGCTTTCCATAGTAAATGTGCACCATGGCCTGAAGCTGTGATCCCTCTGAAAGATCACCCTGGACAAGCTGTTTGTTGGAAACATCCTTCTGATTGGCGCCTGGATAGAAAGGAGCAGCCTGATACTCCAACAAGTGACATTTCGGAAGTATTTTGCCGTTTGCCTCTTCCTTTTGTTAACGAGGAATTCAAGATCGACTTCACCTGGAAAGACATGGACAATAAGATGGAGCCACCGCCATATATACACATAAGACGCAATGTATACCTAGTGAAGAAAAAGCGTAGTGATGTAGATGATGAAGAATTCCTTAGAGAGAATGATGAGTTTTACGTATGTCCTTTGTTCATGGTTCAATGCATAAGCTGCTCAAAGGCTTGTCGGTGCTCTGAAAATTGTACTAATCGGCCATTTCGCAAGGAGAAAAAGATCAGGGTTGTCAAGACTGAGTTTTGTGGTTGGGGAGTTGAGGCTGCTGAAACAATCGAGAAAGGAGGGTTCATAATTGAGTATATTGGAGAAGTCATCGATGATGCTTCATGTGAACAAAGGCTTTGGGACATGAAATATAAGGGTGTACAGAATTTTTACATGTGTGAGATTCGCAAAGACTTCACAATAGATGCAACTTTCAAAGGAAATTCATCACGTTTTTTAAACCATAGCTGTGATCCCAATTGTGTTTTGGAGAAGTGGCAAGTAGATGGTGAAACTCGCGTTGGTGTATTTGCTGCTCGTTCGATAGAAGTCGGAGAGCCGTTAACATACGATTACAGTTTTTACATGGCTGTCAAAATACAAAGGAAATATTTTAGTGGCATGGAATATTGA 1278 0.4523 MPDLGNRPLPPMPCSPVKPTDAADDSAAVEALPSDFGSDNGVHARVLKRSRGSLRKTGNGKSLWDRLKDPQSLPFLVGAPKMVECCFCHHSVCPGEDLLCSVWGCGSRYHKECAKEVSGVSNLKKFKCPQHACFICKQKKQLRCVRCTTAFHSKCAPWPEAVIPLKDHPGQAVCWKHPSDWRLDRKEQPDTPTSDISEVFCRLPLPFVNEEFKIDFTWKDMDNKMEPPPYIHIRRNVYLVKKKRSDVDDEEFLRENDEFYVCPLFMVQCISCSKACRCSENCTNRPFRKEKKIRVVKTEFCGWGVEAAETIEKGGFIIEYIGEVIDDASCEQRLWDMKYKGVQNFYMCEIRKDFTIDATFKGNSSRFLNHSCDPNCVLEKWQVDGETRVGVFAARSIEVGEPLTYDYSFYMAVKIQRKYFSGMEY* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0537 425 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR3 72 410 - -
Psa1g0537 425 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 409 IPR025787 -
Psa1g0537 425 ProSiteProfiles SET domain profile. 291 408 IPR001214 GO:0005515
Psa1g0537 425 SMART set_7 291 414 IPR001214 GO:0005515
Psa1g0537 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 180 IPR013083 -
Psa1g0537 425 Gene3D SET domain 208 421 IPR046341 -
Psa1g0537 425 MobiDBLite consensus disorder prediction 1 26 - -
Psa1g0537 425 PANTHER SET DOMAIN PROTEINS 72 410 - -
Psa1g0537 425 SUPERFAMILY SET domain 210 409 IPR046341 -
Psa1g0537 425 MobiDBLite consensus disorder prediction 1 17 - -
Psa1g0537 425 Pfam SET domain 302 407 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0537 Psa-Chr1 32481707 32488663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0537 272 407 C2H2 Transcription Factor Family AT2G23740 36.601 2.01e-21 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa1g0537 SET 1.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0537 - - aprc:113859744 630.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0537 1 32481707 32488663 Psa1g0537 1 32481707 32488663 ECH