Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0515 ATGGTTGTGGAGAATCAAAGGGGTTATTTGAGGGATGAAGATGGGGTCATTGACCGTTTTCCTGTCGGTATGCGTGTTCTTGCTGTTGATGACAACCCAACTTGTCTCATGGTTTTGGACAAACTCCTTCGTCAATGCAAATATCATGTTACTACATCTACAAATGCAATTGATGCGCTGAGAATGTTGAGGAGAAACAGAAATAACTTTGACTTGGTTATTAGTGATGTGGATATGCCTGACATGGATGGGTTTAAGCTTCTTGAGCTGGTGGGACTTGAAATGGACTTACCTGTGATCATGTTGTCGGGACACAGTGATACAAATATGGTGTTCAAAGGGATTACACACGGTGCTTGTGACTATCTGCTGAAACCTGTTCGACTTGAAGAGCTCAAGAACATATGGCAACATGTAGTTCGAAAGAAAAAAACCGATTCCAATTATCAAAATAAGGCTTCCAACGAGGATAGGGTCGCTAATATTTCGGGGGGAAATAGTCAAAACATATTGGAAAACAGTGGTGATCAGAATAAAAGGATCGGTAAAAGAAGGAAGGACAGAGATGAAGAGGAAGAAGAAGACGAAGAAGGTGAAGAGGAAGGGGAAGGGACTGGAGACGAGGATGACCCGTCGTCACAGAAGAAACCACGTGTGGTTTGGTCTGTTGATCTGCATAGGAAATTTGTCTGTGCTGTTAACCAACTCGGCTTGGAGAAGGCTGTTCCGAAGAAAATACTCGATCTGATGAATGTTGATGGGCTTACTAGGGAAAATGTGGCAAGCCATCTGCAGAAATATAGACTCTATCTGAAAAAGGCAGCCTATCAAGCTAACATGGTTGCTGCATTCGGTGGCGGTAACGATTCATACCTTCGGATGAGTGGAATAGATGGATATGCAGACTTTTGCACCTCGCCTGGATCTAGAAGGATCTCGAGTACCACCTTGCAATCATATTCATCAAGTGGACTTTTCGGTAGGCTGAATTCTCCTGCCAGCTTTAACATGAGAGGAATTAGTCCTTCAACACTGATTCGGCCTGTTCAGAGTCAAAACATCAACAGCTCGTTGAGCAAACTTGGAAACCTCCAGTCATCATCCATGATATTTCCCGCAAATCAAAGCTCAAGCTTATTACACAGTATTCCAACTGAGCTTAACCCAGTAGATTCCACTGGATTTGGAGTCACGTCCGGCTTCCAGGATAGTAGGGCTAATAACTGTTCTCTACAAGTCTCAAACCATCATTTATTGTTACAAGGAGATTCACGACCGACACACAATGCAAGGACATACAGAAATCAACCTTCTCTTGGTTCTGCTTCTTTGGGAAACACAAACATCGGCATTTGTGGTTCTTCTAATTTGTTGGATTATAATCGGTGTACTGAAAACTTCGAAAGTGAAGCGTTGCCTAAGTTTCCTGCCAGTTCTTTGCCGGTATGCGGGTCTTTCAATACTGACCAAACGCCTCCCACTAGCATTACTGCTTTGAACCAAATATCTCCGATTGGCAATATTCCAGTTGACTTTTCATCTGGAGAAGCAATCAATGCTACTTTGAAGGATGCCAGAGATGTTTTGACGAGATTCCAAGAAGGCGGCTTTATTGAGAATATTATGCAGCCTTCTGGTTATGCCCCGCGACAAAGGTGGGAAGAACATAAAGTGGATTACAGCGAAAACATGAGACGTCCCTTCATAACGCAAGAGCCAAACGAGACAACATTAATGGATGGAGAAATGGGACTTTATGATGCCTACCCTATTGGATCATGTATTTGA 1788 0.4306 MVVENQRGYLRDEDGVIDRFPVGMRVLAVDDNPTCLMVLDKLLRQCKYHVTTSTNAIDALRMLRRNRNNFDLVISDVDMPDMDGFKLLELVGLEMDLPVIMLSGHSDTNMVFKGITHGACDYLLKPVRLEELKNIWQHVVRKKKTDSNYQNKASNEDRVANISGGNSQNILENSGDQNKRIGKRRKDRDEEEEEDEEGEEEGEGTGDEDDPSSQKKPRVVWSVDLHRKFVCAVNQLGLEKAVPKKILDLMNVDGLTRENVASHLQKYRLYLKKAAYQANMVAAFGGGNDSYLRMSGIDGYADFCTSPGSRRISSTTLQSYSSSGLFGRLNSPASFNMRGISPSTLIRPVQSQNINSSLSKLGNLQSSSMIFPANQSSSLLHSIPTELNPVDSTGFGVTSGFQDSRANNCSLQVSNHHLLLQGDSRPTHNARTYRNQPSLGSASLGNTNIGICGSSNLLDYNRCTENFESEALPKFPASSLPVCGSFNTDQTPPTSITALNQISPIGNIPVDFSSGEAINATLKDARDVLTRFQEGGFIENIMQPSGYAPRQRWEEHKVDYSENMRRPFITQEPNETTLMDGEMGLYDAYPIGSCI* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0515 595 Gene3D - 212 274 - -
Psa1g0515 595 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 216 269 IPR006447 GO:0003677
Psa1g0515 595 MobiDBLite consensus disorder prediction 144 217 - -
Psa1g0515 595 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 213 272 IPR017930 -
Psa1g0515 595 MobiDBLite consensus disorder prediction 152 176 - -
Psa1g0515 595 Pfam Myb-like DNA-binding domain 218 268 IPR001005 -
Psa1g0515 595 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Psa1g0515 595 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Psa1g0515 595 SUPERFAMILY CheY-like 23 148 IPR011006 -
Psa1g0515 595 MobiDBLite consensus disorder prediction 191 207 - -
Psa1g0515 595 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 571 IPR045279 GO:0009736
Psa1g0515 595 CDD REC_typeB_ARR-like 26 140 - -
Psa1g0515 595 Gene3D - 24 208 - -
Psa1g0515 595 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 571 - -
Psa1g0515 595 SUPERFAMILY Homeodomain-like 214 273 IPR009057 -
Psa1g0515 595 SMART REC_2 24 136 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0515 Psa-Chr1 31770981 31774308 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0515 16 341 Response Regulator Gene Family AT2G25180 55.623 2.84e-111 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Psa1g0515 Response_reg 1.3e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0515 K14491 - gmx:100807822 686.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0515 1 31770981 31774308 Psa1g0515 1 31770981 31774308 ECH