Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0479 ATGGCGGTTTTTGGGCTCGCCGCAATGATAAAACAAGAAATATCAACAATGAAACTGATTAGACACCCAAATGTTATTCGCATGCATGAGGTAATAGCTAACAAGTCAAAGATATTCATTGTAATGGAACTTGTGACTGGTGGGGAGCTGTTCGACAAAATTGCACGCAGTGGGAGGTTGAAAGAAGATGAAGCAAGAAAATACTTTCAGCAGCTTATATGTGCTGTGGATTACTGTCATAGTAGAGGTGTTTTCCACAGAGACCTAAAGCCTGAGAATTTGTTGCTGGATGCTCATGGAACGCTTAAAGTATCGGATTTTGGATTGAGTGCATTACCTCAACAAATCCGGGAAGATGGGCTACTTCATACAACATGTGGTACGCCAAACTATGTTGCTCCAGAGATTTTTAAGGCTGAGTTCGCCTGTCCTCCATGGTTCTCTTCAAGTGCAAAAAAGCTAATCAAGAGAATCCTTGATCCCACTCCCCGCACTCGGATTACAATTGCCGAGGTAATTGAAAATGAGTGGTTCAAGAAGGGATATACGCCTCCTGTGTTTGAACAGGCTAATGTTAGTCTTGATGATGTGAATTTTATTTTCAATGGTTCTATGGATTCAGATAATAGTGTTGTTGAGAGGCAAGAAGAGGGGCCTGTTGCACCCGTGACCATGAATGCATTTGAACTTATCTCTAAATCTCAGGGCCTCAACCTTAGTAGTCTGTTCGAGAAGCAAATGGGACTTGTTAAAAGGGAAACAAGATTCACATCCAAATGTTCAGCGAATGAGATCATTTCAAAAATCGAGTCAGCTGCAGGACCTCTCGGTTTTGATGTCAAGAAGAACAACTGCAAGTTAAGGATTCATGGGGAAAAGACTGGACGGAAAGGTCATCTATCTGTAGCCACGGAGATCTTGGAGGTGGCCCCTTCAATTTACATGGTTGAGATGCGAAAGTTTGAAGGAGATACTCTAGAATTTCACAAGTTCTACAAAAGTATATCTACTGGGCTGAAAGATATCGTTTGGAAAGCAGATCCGATCGCTGAAGAAATAGACAGTGGTGGCAGTAGTAAATCAAAATAA 1089 0.4169 MAVFGLAAMIKQEISTMKLIRHPNVIRMHEVIANKSKIFIVMELVTGGELFDKIARSGRLKEDEARKYFQQLICAVDYCHSRGVFHRDLKPENLLLDAHGTLKVSDFGLSALPQQIREDGLLHTTCGTPNYVAPEIFKAEFACPPWFSSSAKKLIKRILDPTPRTRITIAEVIENEWFKKGYTPPVFEQANVSLDDVNFIFNGSMDSDNSVVERQEEGPVAPVTMNAFELISKSQGLNLSSLFEKQMGLVKRETRFTSKCSANEIISKIESAAGPLGFDVKKNNCKLRIHGEKTGRKGHLSVATEILEVAPSIYMVEMRKFEGDTLEFHKFYKSISTGLKDIVWKADPIAEEIDSGGSSKSK* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0479 362 ProSiteProfiles NAF domain profile. 220 244 IPR018451 GO:0007165
Psa1g0479 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 84 96 IPR008271 GO:0004672|GO:0006468
Psa1g0479 362 Gene3D Transferase(Phosphotransferase) domain 1 5 138 - -
Psa1g0479 362 Pfam Protein kinase domain 10 138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0479 362 Pfam NAF domain 222 282 IPR004041 GO:0007165
Psa1g0479 362 PANTHER - 136 347 - -
Psa1g0479 362 PANTHER - 8 137 - -
Psa1g0479 362 ProSiteProfiles Protein kinase domain profile. 1 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0479 362 SUPERFAMILY Protein kinase-like (PK-like) 8 198 IPR011009 -
Psa1g0479 362 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 8 137 - -
Psa1g0479 362 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 136 347 - -
Psa1g0479 362 Gene3D Transferase(Phosphotransferase) domain 1 139 184 - -
Psa1g0479 362 CDD CIPK_C 226 341 - -
Psa1g0479 362 SMART serkin_6 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0479 362 Gene3D Kinase associated domain 1, KA1 220 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0479 Psa-Chr1 28806232 28812252 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0479 32 359 CBL-interacting serine-threonine protein kinases AT1G30270 68.733 0.0 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Psa1g0479 Pkinase 3.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0479 - - gmx:100788746 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0863 4 56481517 56483852 Psa1g0479 1 28806232 28812252 PCT