Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0478 ATGTTCCAAGCTGTAAGAACCATAGCTCTACACTCATCTTCACTATGCACAGTCTCTTTAGATAAACCATCATCACAATCTCCTTCATCAATTTCCAAACCAAACACAACCCATTTAATTCCCAAACCAAACACAACCCATTTAACTCCCAAACCCAAAAGCCTCATCATCCAAAACCACCCTCTTTATACACCAACTCATGAAAAGCTTTCAATTCAATTCAAAGAAAAAATCTTGTGTCTTGAAGTAATGGGTATTGATTCAGGTAAAGCACTTTCCCAAAACCCTAACCTTCATACAGCTACATTAGAATCCATTCATTCCATTATCTCCTTCCTTCTCTCCAAAGGAATCCTACACAAAGACCTTCCAAGAATCTTTGGCATGTGTCCAAAGATTCTCACTTCAAGCATCAAAACTGATCTCAACCCAGTTTTTGATTTTCTTGTGCATGAACTTAAAGTGCCTGAACATAGCTTTAGAAAAGTTGTGAAAAAGTGTCCAAGATTGCTTACTTCTAGTGTGGTGGATCAGCTTAAACCAGCTTTGTTTTATTTAAGGAGATTAGGGTTAAGGGATTTAGAGGCTCTGGCTTATCAAGATTGTGTTCTTTTGGTTTCCAATGTTGAAAGGACACTTATTCCTAAGCTTAAGCATTTGGAGAGTATGGGATTTTCTAAAGAGGAGACTAGGTGTATGGTTTTGAGGTGTCCTGCATTGTTGACTTTTAGTATTGAAAATAATTTTCAGCCAAAGTTTGAGTATTTTTCTGTGGAAATGGGAGGGAAGTTGGAGGAGTTGAAAGAGTTTCCTCAGTATTTCTCTTTTAGTTTGGAGAATAGGATTAAAGTTAGACACATGGAGGTTGTTGATAGTGGGGTTAACTTGCCTTTGTCATTGATGCTTAAAAGTACTGATGATGAGTTTAGGGAGTTGATAAAGAAAAGGAGTGGAGGTGGATGA 963 0.3749 MFQAVRTIALHSSSLCTVSLDKPSSQSPSSISKPNTTHLIPKPNTTHLTPKPKSLIIQNHPLYTPTHEKLSIQFKEKILCLEVMGIDSGKALSQNPNLHTATLESIHSIISFLLSKGILHKDLPRIFGMCPKILTSSIKTDLNPVFDFLVHELKVPEHSFRKVVKKCPRLLTSSVVDQLKPALFYLRRLGLRDLEALAYQDCVLLVSNVERTLIPKLKHLESMGFSKEETRCMVLRCPALLTFSIENNFQPKFEYFSVEMGGKLEELKEFPQYFSFSLENRIKVRHMEVVDSGVNLPLSLMLKSTDDEFRELIKKRSGGG* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0478 320 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 18 315 - -
Psa1g0478 320 SMART mt_12 195 226 IPR003690 GO:0003690|GO:0006355
Psa1g0478 320 SMART mt_12 89 119 IPR003690 GO:0003690|GO:0006355
Psa1g0478 320 SMART mt_12 231 263 IPR003690 GO:0003690|GO:0006355
Psa1g0478 320 SMART mt_12 161 192 IPR003690 GO:0003690|GO:0006355
Psa1g0478 320 SMART mt_12 124 156 IPR003690 GO:0003690|GO:0006355
Psa1g0478 320 SMART mt_12 264 295 IPR003690 GO:0003690|GO:0006355
Psa1g0478 320 PANTHER CGI-12 PROTEIN-RELATED 18 315 IPR003690 GO:0003690|GO:0006355
Psa1g0478 320 Pfam mTERF 204 309 IPR003690 GO:0003690|GO:0006355
Psa1g0478 320 Pfam mTERF 81 193 IPR003690 GO:0003690|GO:0006355
Psa1g0478 320 Gene3D Transcription termination factor 3, mitochondrial 142 317 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0478 Psa-Chr1 28717440 28718402 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Psa1g0478 mTERF 7.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0478 K15032 - gmx:100788221 449.129