LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa1g0473	ATGAAGCAGTCTTTTAATCCTTCATTTTTTGGTCCTTCAAAGATTCCACCTACTAATGCACCTGGAAAATTAGAACATGGTTCGTTAGAAGTTTTATCTGGATCTGATGCATACCATGCTTCTTCTGATGCCAGTCTCTTTTCTAGCTCATTACCTGTACTTCCACATGAGAAATTGAACTTAAATGAAACTGAAAATGGTTTTCAATCTGTTGATGACATCTCAACTGACTTTAAAAAGCTTCATCAAGAGGTAGAGCTCAATGGTTCCCTTGAGGATGGTAATAATCATGCAATTGGAACCATGCTTCCTGGTGACGATGATGAGCTTTTGGCCGGCATATTGGATGACTTTGACCTAAGTGGTTTACCCGGTTCTCTTGAGGACTTGGAAGATTATGATATTTTTGGTAGTGGTGGAGGTTTGGAACTTGAAACTGATACACAGGAAAGTCTAAGTGTGGGAGTATCTAAGTTAAGCTTCTCTGATAGCTCTTCTGGCAATGGTTTTCCCCCTTATTCTCTTCCTAATGGGGTCGGAAGCGGAGCTGTTGCTGGAGAACATCCATATGGAGAGCATCCTTCTCGAACATTGTTTGTTCGAAATATTAACAGTAATGTGGAGGATAATGAGCTGCGAACTCTTTTTGAGCAATATGGTGATATTAGAACCCTATATACTGCATGTAAACACAGGGGATTTGTGATGATATCGTATTATGACATCCGTGCTGCTCGAACAGCTATGCGTGCATTACAAAACAAACCTTTGCGGCGTAGGAAACTTGACATTCACTTTTCAATACCCAAGGATAATCCATCGGACAAAGATATCAATCAAGGAACCTTGGTAGTTTTCAATTTGGATCCATCGGTTTCAAATGAAGACCTCCGCCAAATATTTGGGGCTTACGGAGAGGTCAAAGAGATAAGGGAAACTCCTCATAAGAGGCATCATAAGTTTATTGAATTTTATGATGTCAGAGCTGCGGAAGCAGCACTTAAATTATTAAATAGGAGTGATATAGCTGGTAAACGCATAAAGCTTGAACCAAGTCGGCCTGGAGGAGCTCGTCGCAATTTGATGCTCCAACTTAATCAAGAGCTTGACCAAGACGAGTCTCGAAGTCTTAGATATCAAGTGGGTTCGCCTCTAGCCAACTCTCCACCAGGTAATTGGTTACAGTTCAACAGCCCTGTTGAGCAGAGTTCATTGCCAACTATCAATCATTCTCCCAGTTCTAGTATCATGAGCCCAACAACCGGCAGTCATTTATCTGGATTAGCTTCAATTTTGCAACCACAGACGTCAAATACAGTTAAGGTCGCAACTATTGGCAAGGATATAGGTAGGAGTAGTCATGGAGACCACATATTTACCAATATGAGTTCATCCTCTGGATCTACTTTCAACTCACATTCACTTCCTGAGCCAAAATTTAGTCAATATCGCGGGGCCTTGTCCTCATTTGGTACATCAACATCAAATGGGTCTTCAGTGGAAACCTTGACCGCTCCACAGTTTCTATGGGGAAGTCCAAACTTATCCTCAGCGCAAACCAAACCTTCAGCTTGGCCAAAACCATCAGTAGGACATCAACTTAGTACATCAAACGGAACGAGTCATGCTTTCCCATACTCAAGTCGGGGCAATTCCTTTGTCAATTCATCCCAGCAACATCACCATCATCATGTTGGTTCTGCTCCGTCAGGCTTGCCTTTTCAGAGGCACTTTGGTTTTTTCCCCAAGTCATCTGAAACTTCATTGATGAATAATGTTGGCTATAGTGGCATGAGTCTTGGGCACACTGATGGAAATTACATGCTTAATGCCGGCGTCTCTATTCCAAGAAATATGCCTGATAATGGTTCATCAAACTTCAGAATGAGATCTTCTCCCATACTTAGCCCTGTATTTTTGGGTAATGGTCTTTATCCAGGATTGCTACCTACTGCTATGGAGAGTTTTACCGACCGTGTTAGCAGTAGATGGATCGATAACAATGGAAGCCAAGTTGAAAGTAAGAAGTTATTTCAGCTCGACTTGGATAAGATCAGACGTGGGGAAGATACAAGGACTACATTGATGATAAAGAATATTCCAAATAAATACACCTCAAAAATGTTGTTAGCTGCCATTGATGAAAATCAGAAGGGTACCTATGATTTTCTCTACCTGCCAATTGACTTTAAGAATAAATGCAATGTGGGTTATGCATTTATCAACATGTTGTCACCTTCACTCATTATTCCATTCTACGAGACATTCAATGGGAAGAAGTGGGAGAAGTTCAATAGTGAAAAAGTTGCTTCTTTGGCATATGCTCGAATCCAAGGAAAGAATGCTCTTGTAAACCATTTTCAAAATTCAAGTTTGATGAATGAAGATAAGCGCTGCCGGCCTATTGTCTTCCACCCAGATGGTTCTGAAGCCGTTGAGCAGGTCATACAAGAGAGTTTCCCCTCCTACTATAGCAATATTCAGGCAGTTAACCCAAGTGATTCGCTTGGATTTCCTTCAAAGGATGGTTTTCCTATGAGTTTGGATGCAAGTTAA	2556	0.412	MKQSFNPSFFGPSKIPPTNAPGKLEHGSLEVLSGSDAYHASSDASLFSSSLPVLPHEKLNLNETENGFQSVDDISTDFKKLHQEVELNGSLEDGNNHAIGTMLPGDDDELLAGILDDFDLSGLPGSLEDLEDYDIFGSGGGLELETDTQESLSVGVSKLSFSDSSSGNGFPPYSLPNGVGSGAVAGEHPYGEHPSRTLFVRNINSNVEDNELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKLLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDESRSLRYQVGSPLANSPPGNWLQFNSPVEQSSLPTINHSPSSSIMSPTTGSHLSGLASILQPQTSNTVKVATIGKDIGRSSHGDHIFTNMSSSSGSTFNSHSLPEPKFSQYRGALSSFGTSTSNGSSVETLTAPQFLWGSPNLSSAQTKPSAWPKPSVGHQLSTSNGTSHAFPYSSRGNSFVNSSQQHHHHHVGSAPSGLPFQRHFGFFPKSSETSLMNNVGYSGMSLGHTDGNYMLNAGVSIPRNMPDNGSSNFRMRSSPILSPVFLGNGLYPGLLPTAMESFTDRVSSRWIDNNGSQVESKKLFQLDLDKIRRGEDTRTTLMIKNIPNKYTSKMLLAAIDENQKGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKNALVNHFQNSSLMNEDKRCRPIVFHPDGSEAVEQVIQESFPSYYSNIQAVNPSDSLGFPSKDGFPMSLDAS*	852

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa1g0473	851	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	198	262	IPR000504	GO:0003723
	Psa1g0473	851	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	283	348	IPR000504	GO:0003723
	Psa1g0473	851	Gene3D	-	185	279	IPR012677	-
	Psa1g0473	851	MobiDBLite	consensus disorder prediction	519	541	-	-
	Psa1g0473	851	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	2	837	-	-
	Psa1g0473	851	CDD	RRM1_MEI2_like	195	271	IPR034453	-
	Psa1g0473	851	SUPERFAMILY	RNA-binding domain, RBD	193	356	IPR035979	GO:0003676
	Psa1g0473	851	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	196	269	IPR000504	GO:0003723
	Psa1g0473	851	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	281	354	IPR000504	GO:0003723
	Psa1g0473	851	Pfam	RNA recognition motif 2	692	788	IPR007201	-
	Psa1g0473	851	SUPERFAMILY	RNA-binding domain, RBD	694	779	IPR035979	GO:0003676
	Psa1g0473	851	PANTHER	PROTEIN MEI2-LIKE 2	2	837	-	-
	Psa1g0473	851	SMART	rrm1_1	694	770	IPR000504	GO:0003723
	Psa1g0473	851	SMART	rrm1_1	197	265	IPR000504	GO:0003723
	Psa1g0473	851	SMART	rrm1_1	282	350	IPR000504	GO:0003723
	Psa1g0473	851	CDD	RRM3_MEI2_like	695	780	IPR034454	-
	Psa1g0473	851	MobiDBLite	consensus disorder prediction	1	22	-	-
	Psa1g0473	851	CDD	RRM2_MEI2_like	280	350	-	-
	Psa1g0473	851	Gene3D	-	280	378	IPR012677	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa1g0473	Psa-Chr1	28456309	28463233	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa1g0473	191	347	Eukaryotic Initiation Factors Gene Family	AT3G16380	25.843	2.44e-10	62.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa1g0473	-		-	gmx:100787152	1374.76