Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0469 ATGTCATGTATGCTTGATGGATCATGCAGACGAGTTCAGCTTGTGCCTAGGTCAAGAGGAGGTGAAGAACAGTCTCTAGGGCGTTCAAGATTTGGTACTGGAAATGCAGGTCAGGGGTATACTTTTGAAGAGGTCAAGGTTCTTTTTCTAGTAGTTATGGACCTCTGTCGCCGAACTTCTGGTCTGCAACACCCCTTGCCAGTTTCTCAGGTGGGGAGCAGCAACATTCAGGTTCGTTTGCATTATATTGATGGAACTACACTGTACTGCCAGAGGTTGTGGAAGCATCCCTTGGCCACATATGCAGGAAATGGACGACCAACGATGGATTGGCCAACAAGATTGCGAATTGCTTTAGGATCTGCAAAAGGACTTGCTTATCTTCATGAAGATGTATGCTCTGTACTTGACTGTCATCCTAAGATCATTCATCGTGATATTAAAGCTGCTAACATCCTTCTCGATTTTAAGTTTGAAGCAAAGGTTGCTGATTTTGGTCTTGCAAAGATTGCTTCCGATCTCACACTCATGTTTCTACTCGTGATGGGGACTTTTGGGTATCTGGCTCCAGAATATGCAGCAAGTGGAAAACTTACAGACAAATCAGATGTTTTCTCTTATGGAGTCATGCTCCTTGAGCTATTAACTGGACGTCGACCGGTTGATAAAAATCAGACTTACATGGATGATAGTTTGGTGGAATGGGTTGTGCGTGCCTTAGAAGGAGACGTGTCACTAGCAGATCTTAATGAAGGAGCATATCAAGAGGAGACTGAATAG 780 0.4397 MSCMLDGSCRRVQLVPRSRGGEEQSLGRSRFGTGNAGQGYTFEEVKVLFLVVMDLCRRTSGLQHPLPVSQVGSSNIQVRLHYIDGTTLYCQRLWKHPLATYAGNGRPTMDWPTRLRIALGSAKGLAYLHEDVCSVLDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKIASDLTLMFLLVMGTFGYLAPEYAASGKLTDKSDVFSYGVMLLELLTGRRPVDKNQTYMDDSLVEWVVRALEGDVSLADLNEGAYQEETE* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0469 259 Pfam Protein kinase domain 117 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0469 259 Gene3D Transferase(Phosphotransferase) domain 1 8 258 - -
Psa1g0469 259 SMART serkin_6 25 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0469 259 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Psa1g0469 259 SUPERFAMILY Protein kinase-like (PK-like) 97 227 IPR011009 -
Psa1g0469 259 ProSiteProfiles Protein kinase domain profile. 1 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0469 259 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 103 235 - -
Psa1g0469 259 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 103 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0469 Psa-Chr1 28166934 28169474 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0469 103 251 Trihelix Transcription Factor Family AT1G70460 64.000 1.82e-57 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Psa1g0469 Pkinase 1.1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0469 - - gmx:732569 227.639