Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0452 ATGCGGAGCCACATTGTGTGTAGTGGGTGTAGGAACATGTTGCTTTACCCTAGAGGAGCAACCAATGTTTGTTGTGCATTGTGCAACACGATTACTCCTGTTCTTCCTCCCGGAATGGAAATGTCGCAACTTTATTGTGGAGGCTGTAGGACATTGCTAATGTACACACGCGGAGCTACCAGCGTGAGATGTTCCTGCTGTAACACTATAAATCTTGTACCAGATTCTAATCAAATGAGCCATATCCATTGTGGGAACTGTCGAACAACACTCGTGTATCCTTATGGAGCTCCCTCGGTCAAATGTGCAATATGTCACTATATTACTAATGTCAGTATGACCAATGGAAGGCCACCGCTTCCTGCACAGCGACCTAATGAAACAACCAGTTCAGAAACGTCAAGACCCCGCTTTGAGAGCCAAACTGTAGTAGTAGAAAATCCTATGTCCGTTGATTCAAGTGGGAAATTGGTAAGCAATGTTGTCGTGGGTGTTACAACAGAGAAGAAGTGA 513 0.4483 MRSHIVCSGCRNMLLYPRGATNVCCALCNTITPVLPPGMEMSQLYCGGCRTLLMYTRGATSVRCSCCNTINLVPDSNQMSHIHCGNCRTTLVYPYGAPSVKCAICHYITNVSMTNGRPPLPAQRPNETTSSETSRPRFESQTVVVENPMSVDSSGKLVSNVVVGVTTEKK* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0452 170 PANTHER PROTEIN LSD1 1 170 IPR040319 -
Psa1g0452 170 MobiDBLite consensus disorder prediction 116 141 - -
Psa1g0452 170 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 43 73 IPR005735 -
Psa1g0452 170 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 33 IPR005735 -
Psa1g0452 170 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 81 110 IPR005735 -
Psa1g0452 170 Pfam LSD1 zinc finger 84 108 IPR005735 -
Psa1g0452 170 Pfam LSD1 zinc finger 46 70 IPR005735 -
Psa1g0452 170 Pfam LSD1 zinc finger 7 31 IPR005735 -
Psa1g0452 170 PANTHER PROTEIN LSD1 1 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0452 Psa-Chr1 27487802 27491485 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Psa1g0452 zf-LSD1 9.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0452 - - gmx:100776394 294.664