Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0431 ATGGAACAGTTGAAATTGGATGCAAATTCTGATGCCAAAGAGGACGGTCCTCTTCGGCACAAGCCGAAAAAGAACAATGCACTTGAGGCTTCTGAAAGTCTGAGAAGTAAAAAGATATCTGCTAGATGGGATCCAGCCGAAGCATGTCGGCCAATAATCGACGGAGCACCTGTGTTTCATCCGACTATTGAAGAGTTTGAAGATACTCTGAGTTATATTGCAAAGATACGCCCTCTAGCTGAACCTTATGGCATATGTAGGATTGTCCCTCCAGCTTGCTGGGTTCCACCTTGCCTTCTTAAGGAGAAAGATATATGGGAAAATGCTGAATTTTCGACCCGTATTCAGCAAATTGATTTACTTCAAAATAGAGAACCTATGAGGAAAAAGAGTAGGGGAAGGAAACGAAAACGTAGAAAGAACTCCAAAATGGGAACATGTAGGAGAGTTTCCAATTCTGCTTCTGAGGCTAATAAAGCCTGTGAAGCTGAAGAGAAATACGGATTCCAATCAGGGTCGGACTTCACATTTAAAGACTTTCAGCAATATGCTAGTTACTTCAAGGAATGCTACTTTGGGTTGAAAGATGCCAATGATAGCGACAAACTCAGTGATAGTAACCACCAAAAGAGACCGGAGCCCTCCGAGGAGGAAATTGAAGGTGAATACTGGCGGATAGTTGAGCAACCAACTGATGAAGTTGAGGTGTTTTATGGAGCCGACTTGGAAACTGGAGTATTTGGAAGTGGTTTTCCTAAGGCATCATCCTTAACCAAGGGTTATCCAGATCAATATGCCCTTTCTGGTTGGAATCTAAATAACTTTCCACGACTACCGGGTTCTGTACTAAGTTTTGAAGGAAGTGACATCTCAGGAGTACTAGTTCCATGGCTGTATGTTGGCATGTGCTTTTCATCATTTTGCTGGCATGTTGAGGATCATCACCTCTATTCCCTTAATTATCTACACTGGGGTGACCCAAAAATATGGTATGGAGTACCTGGAAGCCATGCTTCCGCATTAGAAGATGCAATGAAGAAGCACTTGCCTGATTTGTTTGAAGAACAACCTAATCTACTAAATGATCTGGTAACTCAGTTATCTCCATCAACTCTTCAATCTGAGGGAGTTCCCGTTTATCGCACCGTTCAACATTCTGGGGAATTTGTCATTACCTTTCCAAGGGGGTATCACTCTGGGTTCAATTGTGGTTTCAACTGTGCAGAAGCAGTGAATGTAGCTCCTGTTGATTGGTTAATGCATGGCCTGAATGCTGTTGAGCTTTATAGTTTACAACGCCGTAAGACATCCTTGTCACATGACAAGCTCTTATTTGGATCATCATTAGAAGCTATACGAGCCCTTGCAGAGTTAAATCTCCATGGAAAGGAAAGTCCAAAAAATTTGAAATGGAAAAGCGTATGTGGGAAAGATGGAGTTCTTACTAATGCATTTAAGGCAAGGATAAAGATGGAAGAAGAGAGACTAGCCTGTCTTCCAACTCATTTTAATTTGCTGAAGATGGCCAGTGACTTCGATTTGCATACAGAAAAAGAATGCTTCTCTTGTTTCTATGACTTATACTTATCTGCTGTAGGTTGCGAGTGCTCTCCTGATCGATATTCCTGTCTTAAGCACGCAAGTTCGCTCTGCTCATGCGAAATGGACAAAAGATTTGTTCTGCTTCGACATAATATGAATGAGCTAAACAAATTGCTTGAAGCACTAGAAGGAGATTCACGTGCTCTTGAGTTATGGGAAAATAGAAACTTCGGAATGGTTTCTTCCGAGGAGAATGAGGTGGAGGGAGACAAAGGTCTCGGAGAAACCAAGGATAGTTCAAATAGTCATGTTTCTTCAGAGCCAATGCAGTGTGAATCTCACCCTTTAACTCTTAGTGCACCAAATGAAAGTATAGATAGTGATAATGACAATAAAATTATTGTAGACAAAGATACGGTGGACCACGCAGCTTCTCTAGATTTGAACCTTGATCTTATATCTGGTGAGAATGAAAAGCATTTGGTGCATATTGCTGAGAACCATCCCGACAAGGGTGATTCAACAGAGGAAAAAGTAAGCTGTTTAGAGATCAAAAAGGAACAAACCAACATGGAATTTGTTTGTATGGGTGACCTATCACATTCATTTTCTGATGCGAAGACAGAAGTTTCATCATGCTCAAGAGATATTCACAATCCTTGTACATCTGATGATGGAAAATATGAGGTGGATCTGCAAATTGATTCAGAATCAAGAAAGAAACCCAAAATTGTGTGTGAAAACACGAGTACACAGGAGAGCGGCCTAATGCAAATTTTTGGTACTTCTGTCAAGCCTATAAGTTTGGGATCTGTTGTTTATGGAAAGCCATGGTCCAGTAAGAATGCAATATATCCAAAAGGATTCAAGAGTCGAGTTAATTTCTTTAATATACTCAATCCAACAAGAATCTGTAGCTATGTTTCTGAAGTCATTGATGCCGGACTTCTTGGTCCTCTTTTCAAGGTTACAATGGAAGAATGTCCGAGCGACACTTTCACGGACACCTCAGCAGATAAGTGTTGGGAATCAGTTCTAAAAAGACTGCATAATGAAATTATGGAGCGAAGGAATCGAGGTGAACATGAACTTCCTTCCTTAGAGCTTCTGAACAACATTAATGGTCTTAGAATGTTTGGCTTCCTTTCCCCGTCCATTATTCAGGCCATCGAAGGTCAAGATCCCGGTCATCAGTGTGCAGAGTATTGGAATCACAAAGTTTTCCCTACATCTCCAGGCAGTGTCATTGATAACTGTAATGTCCTATCTTGTTCAACTTCAAGCAGCCCTTTAGATAATAACGTCAACATCAAAGTTTTCGGTATCAATTTGATTGATCATACAAAGGAAAACACAAGAGGAAGTTATCATTCAGAGATGAAACAAATGCTACAAAAGGCAAGTCCTGAGGAGCTAAACTTGTTGCGCAAGTTACTTATCTTGGACTCACAGTGCTCTGAGTGGAGAATGACATTGACGTCACTGATGGATGAGATCCAGAAAGGTTTGTAG 3054 0.409 MEQLKLDANSDAKEDGPLRHKPKKNNALEASESLRSKKISARWDPAEACRPIIDGAPVFHPTIEEFEDTLSYIAKIRPLAEPYGICRIVPPACWVPPCLLKEKDIWENAEFSTRIQQIDLLQNREPMRKKSRGRKRKRRKNSKMGTCRRVSNSASEANKACEAEEKYGFQSGSDFTFKDFQQYASYFKECYFGLKDANDSDKLSDSNHQKRPEPSEEEIEGEYWRIVEQPTDEVEVFYGADLETGVFGSGFPKASSLTKGYPDQYALSGWNLNNFPRLPGSVLSFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASALEDAMKKHLPDLFEEQPNLLNDLVTQLSPSTLQSEGVPVYRTVQHSGEFVITFPRGYHSGFNCGFNCAEAVNVAPVDWLMHGLNAVELYSLQRRKTSLSHDKLLFGSSLEAIRALAELNLHGKESPKNLKWKSVCGKDGVLTNAFKARIKMEEERLACLPTHFNLLKMASDFDLHTEKECFSCFYDLYLSAVGCECSPDRYSCLKHASSLCSCEMDKRFVLLRHNMNELNKLLEALEGDSRALELWENRNFGMVSSEENEVEGDKGLGETKDSSNSHVSSEPMQCESHPLTLSAPNESIDSDNDNKIIVDKDTVDHAASLDLNLDLISGENEKHLVHIAENHPDKGDSTEEKVSCLEIKKEQTNMEFVCMGDLSHSFSDAKTEVSSCSRDIHNPCTSDDGKYEVDLQIDSESRKKPKIVCENTSTQESGLMQIFGTSVKPISLGSVVYGKPWSSKNAIYPKGFKSRVNFFNILNPTRICSYVSEVIDAGLLGPLFKVTMEECPSDTFTDTSADKCWESVLKRLHNEIMERRNRGEHELPSLELLNNINGLRMFGFLSPSIIQAIEGQDPGHQCAEYWNHKVFPTSPGSVIDNCNVLSCSTSSSPLDNNVNIKVFGINLIDHTKENTRGSYHSEMKQMLQKASPEELNLLRKLLILDSQCSEWRMTLTSLMDEIQKGL* 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0431 1017 SMART fyrc_3 834 928 IPR003889 GO:0005634
Psa1g0431 1017 Pfam JmjC domain, hydroxylase 297 413 IPR003347 -
Psa1g0431 1017 SUPERFAMILY Clavaminate synthase-like 261 445 - -
Psa1g0431 1017 MobiDBLite consensus disorder prediction 1 33 - -
Psa1g0431 1017 ProSiteProfiles FYR domain FYRN motif profile. 770 828 IPR003888 GO:0005634
Psa1g0431 1017 Gene3D Cupin 41 414 - -
Psa1g0431 1017 SMART JmjN_1 55 96 IPR003349 -
Psa1g0431 1017 SMART cupin_9 264 430 IPR003347 -
Psa1g0431 1017 MobiDBLite consensus disorder prediction 201 221 - -
Psa1g0431 1017 MobiDBLite consensus disorder prediction 128 145 - -
Psa1g0431 1017 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Psa1g0431 1017 Coils Coil 559 589 - -
Psa1g0431 1017 SMART fyrn_3 784 828 IPR003888 GO:0005634
Psa1g0431 1017 Pfam F/Y-rich N-terminus 781 825 IPR003888 GO:0005634
Psa1g0431 1017 Pfam F/Y rich C-terminus 832 919 IPR003889 GO:0005634
Psa1g0431 1017 MobiDBLite consensus disorder prediction 122 151 - -
Psa1g0431 1017 ProSiteProfiles JmjC domain profile. 264 430 IPR003347 -
Psa1g0431 1017 PANTHER LYSINE-SPECIFIC DEMETHYLASE 610 1015 - -
Psa1g0431 1017 PANTHER LYSINE-SPECIFIC DEMETHYLASE 10 598 - -
Psa1g0431 1017 ProSiteProfiles FYR domain FYRC motif profile. 830 920 IPR003889 GO:0005634
Psa1g0431 1017 MobiDBLite consensus disorder prediction 596 642 - -
Psa1g0431 1017 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Psa1g0431 1017 Pfam jmjN domain 57 90 IPR003349 -
Psa1g0431 1017 Gene3D - 775 914 - -
Psa1g0431 1017 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 610 1015 - -
Psa1g0431 1017 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 10 598 - -
Psa1g0431 1017 MobiDBLite consensus disorder prediction 612 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0431 Psa-Chr1 26398942 26405079 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0431 64 1014 JUMONJI Transcription Factor Family AT4G20400 47.242 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Psa1g0431 JmjC 1.1e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0431 - - gmx:100801775 1455.65