Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0421 ATGGCAGCAGCATCAACTCCTAGAGTCATAACCTGCAAAGCTGCAGTAGCATGGGGAGCTGGAGAGCCATTGGTACTGGAGGATGTGGATGTCAGTCCTCCCCAACCATTCGAGATTAGGATTAAGGTTGTCTCAACTTCTCTTTGTCGCAGTGATCTTTCTGCTTGGGAATCCCATGCTATATTTCCTCGCATATTTGGCCATGAAGCATCTGGGGTTGTTGAGAGTGTTGGGCTCGGAGTGACTGAATTCCAAGAAGGGGACCATGTGCTAACGGTTTTCATCGGAGAATGCATGTCATGCAAGCCGTGCAAATCAGGAAAAAGTAATATTTGTCAAGCTTTGGGATTGGAAAGAAAGGGCTTAATGCATAGTGATCAAAAGACAAGATTCTCAATAAAAGGGAAGCCTGTTTATCATTATTGCGGTGTTTCAAGTTTTAGCGAATACACAGTTGTCCATTCTGGATGTGCAGTGAAAGTTAGTCCTCATGTACCTCTCGACAAAATATGCCTTCTAAGCTGTGGCGTCGCTGCAGGTCTGGGCGCAGCATGGAATGTTGCCGATGTGACAAAAGGATCAACAGTTGTTATATTCGGTCTCGGAACTGTTGGCCTTTCTGTTGCTCAAGGTGCTAAACTAAGAGGTGCATCTAGAATAATCGGTGTTGACAACAATCCGCAGAAGTGTGAAAATGCTCAATCTTTTGGGGTTACAGAAGTTGTTGATCCGAATTCGTACAGAGAACCTATCGCGCAGGTTATTAAGCGCATTACTGATGGTGGAGCCGATTTCTGTTTCGAATGTGTCGGGGACACTGATATGATAACAACTGCATTGCAATCATGTTGTGATGGATCGGGTTTGACTGTAACACTCGGTGTGCCGAAGGTGAAGCCTGAGATGTCGGCTCATTATGGACTATTCTTGACAGGAAGAACATTAAAAGGATCTCTATTTGGAGGATGGAAACCTAAAACCGATCTTCCTTCACTAGTAGAAAAATATATGAACAAGGAAATTGAGATTGATGACTACATAACACACAATTTGGCATTTGATGACATTAACAAAGCTTTCAACCTCATGAAAGAAGGAAAGTGTCTTCGTTGTGTTATCCACATGCCATGA 1131 0.435 MAAASTPRVITCKAAVAWGAGEPLVLEDVDVSPPQPFEIRIKVVSTSLCRSDLSAWESHAIFPRIFGHEASGVVESVGLGVTEFQEGDHVLTVFIGECMSCKPCKSGKSNICQALGLERKGLMHSDQKTRFSIKGKPVYHYCGVSSFSEYTVVHSGCAVKVSPHVPLDKICLLSCGVAAGLGAAWNVADVTKGSTVVIFGLGTVGLSVAQGAKLRGASRIIGVDNNPQKCENAQSFGVTEVVDPNSYREPIAQVIKRITDGGADFCFECVGDTDMITTALQSCCDGSGLTVTLGVPKVKPEMSAHYGLFLTGRTLKGSLFGGWKPKTDLPSLVEKYMNKEIEIDDYITHNLAFDDINKAFNLMKEGKCLRCVIHMP* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0421 376 CDD alcohol_DH_plants 10 374 - -
Psa1g0421 376 SUPERFAMILY GroES-like 6 185 IPR011032 -
Psa1g0421 376 Pfam Zinc-binding dehydrogenase 204 324 IPR013149 -
Psa1g0421 376 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
Psa1g0421 376 Gene3D - 15 370 - -
Psa1g0421 376 SUPERFAMILY GroES-like 326 374 IPR011032 -
Psa1g0421 376 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 165 339 IPR036291 -
Psa1g0421 376 Pfam Alcohol dehydrogenase GroES-like domain 38 160 IPR013154 -
Psa1g0421 376 PANTHER ALCOHOL DEHYDROGENASE-LIKE 6 7 374 - -
Psa1g0421 376 PANTHER ALCOHOL DEHYDROGENASE 7 374 - -
Psa1g0421 376 Gene3D - 180 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0421 Psa-Chr1 26058026 26060858 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0421 38 359 Monolignol Biosynthesis Gene Families AT4G37990 23.324 3.79e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0421 K00001 - gmx:100819938 693.73