Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0417 ATGGATGCTAAATTTAAGGGGGAGAATCAGTTTTTGTATGAACCAGTAGTGCCAGAGATGAAGGGTGGTGTTGGAAGTGGGAGTTCAAAGTGGGATTTGAATGATTGGAGATGGGATGGTGATCTTTTCACTGCTAAGCAACTTAATTCAGTGCCGACGGATTGTAGGAATCGTCAACTTTTCCCGGTTGATCCCGAAATACCAGAAAATGTTAACAATTTGGCTTCTGGTGAAGGAAGTAGAGAATTGGAGAAGAGGAGGAGGGGTTATTTTGATGAAGGGTTGGAGATGAATGATGATTTTGGTTCTCTTAATTTGAATCTTGGGGGTCAAGTTTACCCTATTATGGAAGGGGAGGAAAAAAGTGGTAAGAAAACGAAGATTACTGTGACTACTTCGAATCGGGCTGTTTGTCAGGTGGAAGATTGTAGGGCGGATCTTAGTAACTCTAAGGATTACCATCGTCGCCACAAAGTTTGTGATGTGCATTCTAAGGCTAGCAAAGCACTGGTGGGAAATGTTATGCAGCGATTTTGTCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGTAGGCGTCTTGCAGGTCATAATAAGAGGAGGAGGAAGACACATCCTGATGGGGCTGTAGTTAACGGAGGGTCTCCGAGTGAAGAAAGGGGGAGTAACTATCTATTGACAAGTGTACTAAGGATACTGTCCAATATGCATTCAAACGACGCAGATCGCATGGGAAACTCAGATGTTCTTTCTCGTCTGCTTGGGAACCTCACAAGTTTAACTGGTGCAGTAAACGGAAGGAATATAGCATCGTTGTTGGAGGGATCTCAAGATTTAGTAAAAGCTGGTACATCTGGAGCTGCCCAAAATGTTCCAAACACAAATTCAATCGATTCTGAACCACCAAGACCTTCCGAGTCTTCCCTCAAAACGAGTAACAATCTAATCCATCAGGATCCTCCCGATTCTAGGTTACAGTGTGCGACAATTCCTTCAAATCATACGGCTCAAAAATGTATACCTTCAAGCAGTGTTGGAGTAGGATGTTTAAAATCTCCTTTGGAACCACGATCCAAAGGCATGCTTCCTTCACATGGCAGCCTTCCGCCTCGACCAGTTGCCGTAGAGACTACAGCGGGAAGAAATGGTTTAATTAATATTGACCTGAATAATGTATATGATGACGTCCAGGATTATATTGAGAACCCCGGAAATTCTCGTCTTCATGTGGCTTCTGGGGTTGGGTCTCATGATCGTCCTTCATCGGTACAATATGAATCTCTCAAGTCAAGTCCACCACAGACAAGTAGAAACTCAGATTCAACCTCCAGCCAGTCACCATCTACTTCTAGTGGGGAAGGCCAGAGTCGAACAGATCGAATTGTTTTCAAACTTTTTGGCAAGGATCCTAATGATTTCCCTGTTGTTCTTCGATCACAGATCCTTAGCTGGTTATCTCACAGTCCGACAGAGATAGAGAGCCATATAAGGCCGGGCTGTATTATTTTAACTATATGTCTCCGCCTAGAAAATTCGGCATGGGATGAGCTATGCTATAATCTGGGATCTAGCTTGAGAAAGCTTCTAGCTGCATCGAATGATTCACTTTGGAGAACAGGATTGATATATACAAGAGTAAAGAACTCTGTAGCTATTCTGTATAATGCTCAGGTGGTCTTGGATGTGCCATTGCGTCTTGGAAGCCCAGATAATTGTCAGATTTTATGTAAAATTTTCTGTGAAAGGGTTAAACCTTTTGTGCCATTGCGTCTTGGAAGCCCAGATAATTGTCAGATTTTGTGCGTTAAGCCCCTTGCTGTTTCTGCGAATGCAGATGTAAAATTTTCTGTGAAAGGGTTAAACCTTTTCCTGTCTAGTGCAAGGTTGCTCTGCGCACTCGAAGGAAAGTATTTGGTAGAGGAACGGTGTCATGATTTGATTGATGGTGCTGATGCAGCCACTGGACACCATGAGCTTCAGAATCTCAGCTTCTCTTGTCATATACCAAATATGACTGGAAGAGGGTTTATTGAGGTCGAAGATAATAGTCTCAGCAGCTGTTCCTTTCCATTCATAGTTGCAGAGCCTGAAATTTGTTCCGAGATATGTAATCTAGAAACTGTCATTGAAGCAGCAGAGACTGCGGATGACATCCAGATAAAAGCTAAATTAATGGAAGAAAAGACTCGAGCAATGAATTTCATACAAGAAATGGGTTGGCTCCTTCATAGAATTCGTGTGAAATTTAGGCTAGGGCCAGCGGCACCTGTTCAAGATCGCTTTCACTTTAATCGGTACACATGGCTTGTTGGCTTCTCTATGGATCATGATTGGTGTGCTGTGATGAAAAAACTCTTGGACACTATCTTTGAAGGTGAAGTTGATACCGGAGAACATACCTCTCCCGAGCTTGCGTTGTTAAACATGGGTCTTCTACACAAAGCTGTAAAGAGAAATTGCAGGCCTATGGTAGAATTACTGTTAAACTTTGTGCAAATTAAGGCGTCGGATGGTGGAGACAGTAAAGAGATGCAAGTCAATAAGTCCCCTGACAGATTCTTGTTTAGACCCGATGCTGTTGGGCCTGCTGGAGTGACGCCCCTTCATGTTGCAGCAAGTATGAGTGGTTATGAAACTGTATTGGATGCTTTAACCGATGATCCGGGAATGGTTGGAATTGAAGCATGGAAAAGTGCAAAGGACAATACAGGTTTAACACCCAGTGATTATGCATCCCTTAAGGGGCATTACTCCTACATTCAACTTGTGCAGAGAAAAACAAGCAAGAGAAACCAAACTCAACATGTGCTTGACATCCCAGGCACTGTAGACGGAAACACGAAGAAGCAATTAGACGGACATAAATCATCAAAAGTTTCAAGTTTCAATACAGAAAATATTGCAAGAATGGCAAATCATTGTGGTCTTTGCCAACAGAAACTGGCCTACAGCGGCAACCGCGGCATGAGGAGGGCACTTGTCTATAGGCCGGCGATGCTGTCAATGGTCGCGATTGCAGCTGTATGTGTTTGTGTGGCCTTACTCTTCAAAAGCTCCCCAAGAGTTTACTATGTATTCCAGCCTTTCAGCTGGGAATCTTTGGAGTATGGTTCAATGTAA 3144 0.4316 MDAKFKGENQFLYEPVVPEMKGGVGSGSSKWDLNDWRWDGDLFTAKQLNSVPTDCRNRQLFPVDPEIPENVNNLASGEGSRELEKRRRGYFDEGLEMNDDFGSLNLNLGGQVYPIMEGEEKSGKKTKITVTTSNRAVCQVEDCRADLSNSKDYHRRHKVCDVHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDGAVVNGGSPSEERGSNYLLTSVLRILSNMHSNDADRMGNSDVLSRLLGNLTSLTGAVNGRNIASLLEGSQDLVKAGTSGAAQNVPNTNSIDSEPPRPSESSLKTSNNLIHQDPPDSRLQCATIPSNHTAQKCIPSSSVGVGCLKSPLEPRSKGMLPSHGSLPPRPVAVETTAGRNGLINIDLNNVYDDVQDYIENPGNSRLHVASGVGSHDRPSSVQYESLKSSPPQTSRNSDSTSSQSPSTSSGEGQSRTDRIVFKLFGKDPNDFPVVLRSQILSWLSHSPTEIESHIRPGCIILTICLRLENSAWDELCYNLGSSLRKLLAASNDSLWRTGLIYTRVKNSVAILYNAQVVLDVPLRLGSPDNCQILCKIFCERVKPFVPLRLGSPDNCQILCVKPLAVSANADVKFSVKGLNLFLSSARLLCALEGKYLVEERCHDLIDGADAATGHHELQNLSFSCHIPNMTGRGFIEVEDNSLSSCSFPFIVAEPEICSEICNLETVIEAAETADDIQIKAKLMEEKTRAMNFIQEMGWLLHRIRVKFRLGPAAPVQDRFHFNRYTWLVGFSMDHDWCAVMKKLLDTIFEGEVDTGEHTSPELALLNMGLLHKAVKRNCRPMVELLLNFVQIKASDGGDSKEMQVNKSPDRFLFRPDAVGPAGVTPLHVAASMSGYETVLDALTDDPGMVGIEAWKSAKDNTGLTPSDYASLKGHYSYIQLVQRKTSKRNQTQHVLDIPGTVDGNTKKQLDGHKSSKVSSFNTENIARMANHCGLCQQKLAYSGNRGMRRALVYRPAMLSMVAIAAVCVCVALLFKSSPRVYYVFQPFSWESLEYGSM* 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0417 1047 Gene3D - 787 948 IPR036770 -
Psa1g0417 1047 MobiDBLite consensus disorder prediction 420 464 - -
Psa1g0417 1047 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 595 1046 - -
Psa1g0417 1047 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 21 584 - -
Psa1g0417 1047 MobiDBLite consensus disorder prediction 292 319 - -
Psa1g0417 1047 MobiDBLite consensus disorder prediction 202 228 - -
Psa1g0417 1047 Gene3D - 129 199 IPR036893 GO:0003677|GO:0005634
Psa1g0417 1047 MobiDBLite consensus disorder prediction 425 464 - -
Psa1g0417 1047 ProSiteProfiles Zinc finger SBP-type profile. 135 212 IPR004333 GO:0003677
Psa1g0417 1047 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 595 1046 IPR044817 GO:0003677
Psa1g0417 1047 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 21 584 IPR044817 GO:0003677
Psa1g0417 1047 SUPERFAMILY Ankyrin repeat 816 932 IPR036770 -
Psa1g0417 1047 SUPERFAMILY SBT domain 136 216 IPR036893 GO:0003677|GO:0005634
Psa1g0417 1047 Pfam SBP domain 138 211 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0417 Psa-Chr1 25862586 25869092 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0417 22 1046 SBP-box Gene Family AT3G60030 45.096 0.0 758
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Psa1g0417 SBP 1.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0417 - - gmx:100792774 1510.74