Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0408 ATGGCATCGGATCTAAATTCCGGGTTGTCAAAGAAAACAATTTTCGGATTGAAAGTATGGGTATTAATGGGAGTAATGGTTGGATTGTTCATTATAGTCATTCTTGTGGTGCTATCAATATGTCTTACTTTAAGAAAAAAATCCAGAAGAGGAAGTGGAAGCATGCTTCCTCTTGGCCATATTCTTTCTATTTCAGAAGATATTAAAGAAATTAGCGTCGATCAAGTTTCATCGAATAGTCATCCACGAAACGGTGGTTTTATGAACTTCAATGATAAGCTTAGTGATGGCGATTCCGGAAAGGTTTTGATCCAAACAAAGAATGGAGATAATAGCAGTCAATCAGGTTCGTTTAATTGTATAGAGAAAGATCTGAATGGCTCTCAGTCAGGTGAAGATAGCGGTGGTTTTAGGAGCGTTTCGGTTTATAGGTCTTCGTCACATCCTATATCTGCACCGTCGCCTTGTTCTGGGCTTCCTGAATTCTCTCACCTTGGCTGGGGTCACTGGTTTACATTAAGGGACCTTGAACTTGCAACAAACAGGTTTTCAAAAGACAGTATTATCGGTGAAGGTGGTTATGGAATTGTCTATCGAGGTCAACTCATCAACGGGAATCCTGTGGCCGTAAAGAAGCTCCTCAATAATTTAGGACAAGCTGAAAAGGAATTTAGGGTTGAAGTTGAGGCTATTGGTCATGTGCGGCATAAGAACTTGGTTCGGCTATTGGGTTTTTGCATTGAAGGCACTCACAGGTTATTGATTTACGAGTATGTTAACAACGGCAATTTAGAGCAGTGGCTTCACGGAGCCATGCGGCAGCATGGCTATCTTACATGGGAAGCTCGGGTGAAAATTCTTCTCGGAACAGCCAAAGCGCTAGCTTACTTGCACGAGGCGATCGAGCCAAAAGTTGTACATCGAGATATTAAGTCGAGCAATATTCTAATTGATGATAACTTTAATGCTAAAATATCTGACTTCGGGCTTGCTAAATTACTCGGTGCCGGAAAAAGTCACATTACAACTAGAGTAATGGGTACTTTTGGATATGTAGCTCCAGAATACGCCAATTCTGGCTTGTTAAACGAGAAAAGTGATGTTTATAGCTTTGGTGTATTGCTTCTTGAAGCAATTACAGGACGTGACCCGGTCGATTATAGCCGACCAGCAACCGAGGTAAATTTGGTCGATTGGCTCAAGATGATGGTAGGGTGTAGGCGCTCGGAAGAAGTGGTGGACCCCAACATTGAAACTAGGCCATCGACGAGTGCTCTAAAACGATCCCTTTTAACTGCATTGAGATGTGTTGATCCAGATTCTGAAAAAAGACCAAAGATGAGCCAAGTTGTTCGCATGCTTGAATCGGAGGAATATCCCATACCTCGAGAGGATCGAAGACGGCGAAGGAATCAAGCAGGAAACATAGAGGCAGAGAGCCAGAGGGAGATTTCTGATACAGATAAAAGTGACACTCCAGATTCTAGACAAAATGGGAGAAGGAACTAA 1509 0.4235 MASDLNSGLSKKTIFGLKVWVLMGVMVGLFIIVILVVLSICLTLRKKSRRGSGSMLPLGHILSISEDIKEISVDQVSSNSHPRNGGFMNFNDKLSDGDSGKVLIQTKNGDNSSQSGSFNCIEKDLNGSQSGEDSGGFRSVSVYRSSSHPISAPSPCSGLPEFSHLGWGHWFTLRDLELATNRFSKDSIIGEGGYGIVYRGQLINGNPVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGFCIEGTHRLLIYEYVNNGNLEQWLHGAMRQHGYLTWEARVKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDNFNAKISDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVLLLEAITGRDPVDYSRPATEVNLVDWLKMMVGCRRSEEVVDPNIETRPSTSALKRSLLTALRCVDPDSEKRPKMSQVVRMLESEEYPIPREDRRRRRNQAGNIEAESQREISDTDKSDTPDSRQNGRRN* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0408 502 Gene3D Transferase(Phosphotransferase) domain 1 259 471 - -
Psa1g0408 502 CDD STKc_IRAK 189 455 - -
Psa1g0408 502 ProSiteProfiles Protein kinase domain profile. 183 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0408 502 PANTHER RECEPTOR-LIKE KINASE PLANT 2 502 - -
Psa1g0408 502 Pfam Protein kinase domain 184 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g0408 502 PANTHER OS01G0323000 PROTEIN 2 502 - -
Psa1g0408 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 305 317 IPR008271 GO:0004672|GO:0006468
Psa1g0408 502 MobiDBLite consensus disorder prediction 453 502 - -
Psa1g0408 502 Gene3D Phosphorylase Kinase; domain 1 165 258 - -
Psa1g0408 502 SUPERFAMILY Protein kinase-like (PK-like) 167 462 IPR011009 -
Psa1g0408 502 ProSitePatterns Protein kinases ATP-binding region signature. 189 212 IPR017441 GO:0005524
Psa1g0408 502 SMART serkin_6 183 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0408 Psa-Chr1 25493311 25498027 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0408 113 457 Trihelix Transcription Factor Family AT1G70460 47.429 1.20e-93 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Psa1g0408 Pkinase 2.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0408 - - gmx:732653 835.869