Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0398 ATGGAAGAAAAAACTTCAACAAAGATATTTATGGAACTTGATGAACCTGGTAAAAATAGAGATTCAGAAAACAAAACCTATGAACCCTCATCCCTTCATAATAATACTCCAGGATCTCCACTTTTATTAAGTTTGAGTCTTAATAACACAGCACAACTTCCCCATCAAATTCAAGGAAACCCTCAAATCCAAATTGGAAAGCTTCGAGTAAAGCTTGAAGAAGAAAAGAAGGAGAATGAAAATTTAAAAGTTATGCTAAATCTGGTCAACGAACGATGCATTGTTCTTCAGAATCGATTACTTCTACATCGATTATCTTCATTGCCTCAAAACAATCACAACTTGCCGAAGGAAAATATACAAGATGAGAAGAAACCAGTGTTCTCTACTAGGCAGTTCTTGAATATTGATGAGCCTTCACCTTCAGATTGTGGCAAAAAAGAAGGAGTTACTTTAATGGAAAACAATGAGAATATTAAGATTGGAAGAAACTTTGCATATGAGTGCATTAATAATATTCATGAAGGTGAAATAATTAGCAAAAAAGAGGACCAAGCATTTGAGGCTGAATGCAGGAGAGCTAGAGTGTCGATAAGGGCACGATCAGATTTTTCTTTGATGGTGGATGGGTGTCAATGGAGAAAATATGGACAAAAGACAGCCAAGGGAAACCCTTGTCCTCGGGCCTATTATCGATGCAGCATGGGAACTTCATGCCCTGTTCGTAAGCAGGTGCAAAGGTGTTTCAAAGATGAAACTGTTTTCATCACAACCTATGAAGGAAACCACAATCATCAACTTCCACCATCAGCAAAACCAATTGCAAACCTAACATCATCAGCACTCAACACATTCCTTTCCAACTCAACCACAAATTTACAATATGGAAACAATATATCCAGCACATTCCTCTTCTCTTCACCATTATCTCCACCAAACTCAAATGCTATAGCTACTTTCTCTCCATCTCCAACATGTCCTACAATAACACTTGATTTTACACTCCCTCCAAGTAACTATTTGCAGTTCAAAAACCATAAACAATCATCATTGTTTCCTTTTCCATTTCAAGGTTATAATAATTACCCTCAATCATTTGAGGTGTTCCCAAGTATGATAGATGCCGAGAGAAAACTTGCTTTGGTTGATGTTGTGAGTGAAGCTATAGAGAAAGATCCTTCTCTCAAGGCAACATTGTTTGCTGCCATGTCATCATTCACAAATGGTGATCCTTTAAATATTAATAACCACAGCCAACCTAGTAAGAGTGGTTAG 1275 0.3718 MEEKTSTKIFMELDEPGKNRDSENKTYEPSSLHNNTPGSPLLLSLSLNNTAQLPHQIQGNPQIQIGKLRVKLEEEKKENENLKVMLNLVNERCIVLQNRLLLHRLSSLPQNNHNLPKENIQDEKKPVFSTRQFLNIDEPSPSDCGKKEGVTLMENNENIKIGRNFAYECINNIHEGEIISKKEDQAFEAECRRARVSIRARSDFSLMVDGCQWRKYGQKTAKGNPCPRAYYRCSMGTSCPVRKQVQRCFKDETVFITTYEGNHNHQLPPSAKPIANLTSSALNTFLSNSTTNLQYGNNISSTFLFSSPLSPPNSNAIATFSPSPTCPTITLDFTLPPSNYLQFKNHKQSSLFPFPFQGYNNYPQSFEVFPSMIDAERKLALVDVVSEAIEKDPSLKATLFAAMSSFTNGDPLNINNHSQPSKSG* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0398 424 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 3 419 IPR044810 GO:0003700
Psa1g0398 424 SUPERFAMILY WRKY DNA-binding domain 201 268 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa1g0398 424 MobiDBLite consensus disorder prediction 1 36 - -
Psa1g0398 424 SMART WRKY_cls 207 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa1g0398 424 ProSiteProfiles WRKY domain profile. 202 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa1g0398 424 MobiDBLite consensus disorder prediction 1 27 - -
Psa1g0398 424 Pfam WRKY DNA -binding domain 209 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa1g0398 424 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 3 419 - -
Psa1g0398 424 Coils Coil 65 92 - -
Psa1g0398 424 Gene3D WRKY domain 192 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0398 Psa-Chr1 24865218 24875869 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0398 66 334 WRKY Transcription Factor Family AT4G04450 38.065 5.01e-54 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa1g0398 WRKY 1.5e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0398 - - cam:101498660 541.191