Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0381 ATGGATGGTGTGACTGTAAAGGTTGAGCCAGAGCAGTTTATGGTTCTAGAATCTTCTCCTGTTGCTGTTGATGGTGTTAGTTCCAATATGGATGATGGGTCCATGATGAATTTCTCAGCAAACAAGTCGATGGCAGCATCGAGAATGAACGAGACGTTTCCTGATACAAATCAGCTTACCATCTTCTATAACGGGAATATTTGTAGCTATAACGGAATTCCAGCGGAAAAGATGCAAGAAATAATGCTCATGGCTGCTGCTGCTGCCAAGTCTACGGAAACGAAGAATATCGTGAAACAATCTCCCGTTTCTTCACCGATTCCCTCAAGGCCATCTTCTCCAGTTGCTGCTACTGATAATGTCACTCCATCGCAGGCACTCTGCTTTCCTGCAAAGAAGAGTTCCGTCTGCAGGCTTCAAGAATTTCCAATAGCACGCAGACATTCACTTCAAAGGTTTCTTGAGAAGCGGCGAGACAGGTTGGGTAGTAAAGCACCTTATCCGTCTTCGCCAAAAATGAAGGTGGCTGACAACATAGAGAACAACGTCTGCTCTGAGAATTCGCCTGATTCGGTTTCGTTGAAGGGACCAAATGAAGAATTTCAGCCAACTATATCTGCCTCTTGA 627 0.4482 MDGVTVKVEPEQFMVLESSPVAVDGVSSNMDDGSMMNFSANKSMAASRMNETFPDTNQLTIFYNGNICSYNGIPAEKMQEIMLMAAAAAKSTETKNIVKQSPVSSPIPSRPSSPVAATDNVTPSQALCFPAKKSSVCRLQEFPIARRHSLQRFLEKRRDRLGSKAPYPSSPKMKVADNIENNVCSENSPDSVSLKGPNEEFQPTISAS* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0381 208 MobiDBLite consensus disorder prediction 180 208 - -
Psa1g0381 208 Pfam Jas motif 143 167 IPR018467 -
Psa1g0381 208 MobiDBLite consensus disorder prediction 157 208 - -
Psa1g0381 208 ProSiteProfiles Tify domain profile. 52 87 IPR010399 -
Psa1g0381 208 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 29 185 IPR040390 -
Psa1g0381 208 PANTHER DIVERGENT CCT MOTIF PROTEIN 29 185 - -
Psa1g0381 208 SMART tify_2 52 87 IPR010399 -
Psa1g0381 208 Pfam tify domain 55 86 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0381 Psa-Chr1 24117263 24119722 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0381 57 170 Tify Gene Family AT5G20900 53.913 9.69e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Psa1g0381 tify 2.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0381 K13464 - gmx:100306045 231.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0473 4 28885806 28888052 Psa1g0381 1 24117263 24119722 PCT