LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa1g0377	ATGACAAATTCCGAATGCTCTCAACTTCTGTTCATTTGCATCATAACATTAACACCCCTTTTCCTAAACAACATCAATTTCGCATTTGCGACAGACCCATTTCTCCAACAAGAGCAAGACAGGATTGTTAGCGCACTCCCAGGTCAAAACTTCAACGTAACCTTCAAACACTATTCTGGGTATATCACTGTCAACGAGGAAGTTGGACGGACACTGTTTTACTGGTTCATTGAAGCAGATCATATAGATCCCACTTCGAAGCCCCTTCTTTTATGGTTCAATGGCGGCCCTGGATGTTCTTCTATAGCTTATGGAGAAGCCGAGGAAATTGGTCCTTTTCATATTAATTCAGATGGAAAAACGCTTTATCTTAATCCTTATTCTTGGAATCAAGTTGCCAATATTCTTTATATTGATTCTCCTACTGGAGTTGGATTTTCTTATTCAAATAATTCATCTGATTTTCTCAACAATGGAGATAAGAGGACAGCTGAGGATAATCTCATATTTCTATTGAAGTGGTTTAAGCGTTTTCCCCAGTATAAAAAAACAGACTTTTTCATCAGTGGCGAGAGCTATGCAGGACATTATGTTCCCCAACTTAGCCAACTTATTGTCAAGTACAACTCAGCTACAAAACAAGATTCCATAAACTTCAAAGGTTACATGGTAGGAAATGCTCTAATTGATGATTTCCGTGATCAATTGGGGATGTTCCAGTTTATGTGGTCAAGTGGTATGATTTCGGATAAAACATTCAAGCTCTTGAACGTTCTATGTGATTTTCAGTCAGTCGAACACCCGTCAAAGTCATGTGAAAAAATATGGGAGACTGCCTATGAAGAACTTGGTAATATAGACCCGTACAGTATCTTTACCGCTACTTGTCATGCTAATGATAATCAGCGGGTTAAAAGAAAGCGTAGTGCAGGAAGAATCAGAAGTGTTTATGATCCTTGCACCGAGAAGCACAGCACTATATACTTCAATCAACCCGAGGTCCAAAAGATTCTACATGTCGATCCAAATCATAAGCCGGAAAAATGGCAGACCTGCAGTGACGTGGTAAATACTAACTGGAAGGATTCTCCTAGAACAGTTCTCGATATATATCGTGAACTTATTCCTACCGGACTGCGAATATGGATATTCAGTGGTAATACAGACGCTGTAGTCCCGGTAACATCTACTCGCTATTCCATAAACGCTCTCAAGCTTCCAACTGTGAGCCCCTGGCGTGCATGGTATGACAATGGGGAGGTAGGAGGATGGACCCAAGAATACACCGGACTCACGTTTGTAACTGTAAGGGGTGCTGGGCACGAAGTTCCTCTGCATACACCAAAACTTGCTCTAACATTGTTGAAATCCTTTTTAGCAGGAACCTCCATGCCAACTCTTGAACCACCCACTCTCACGGCCGCTTATTAA	1431	0.4116	MTNSECSQLLFICIITLTPLFLNNINFAFATDPFLQQEQDRIVSALPGQNFNVTFKHYSGYITVNEEVGRTLFYWFIEADHIDPTSKPLLLWFNGGPGCSSIAYGEAEEIGPFHINSDGKTLYLNPYSWNQVANILYIDSPTGVGFSYSNNSSDFLNNGDKRTAEDNLIFLLKWFKRFPQYKKTDFFISGESYAGHYVPQLSQLIVKYNSATKQDSINFKGYMVGNALIDDFRDQLGMFQFMWSSGMISDKTFKLLNVLCDFQSVEHPSKSCEKIWETAYEELGNIDPYSIFTATCHANDNQRVKRKRSAGRIRSVYDPCTEKHSTIYFNQPEVQKILHVDPNHKPEKWQTCSDVVNTNWKDSPRTVLDIYRELIPTGLRIWIFSGNTDAVVPVTSTRYSINALKLPTVSPWRAWYDNGEVGGWTQEYTGLTFVTVRGAGHEVPLHTPKLALTLLKSFLAGTSMPTLEPPTLTAAY*	477

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa1g0377	476	SUPERFAMILY	alpha/beta-Hydrolases	43	464	IPR029058	-
	Psa1g0377	476	Pfam	Serine carboxypeptidase	47	460	IPR001563	GO:0004185\|GO:0006508
	Psa1g0377	476	PRINTS	Carboxypeptidase C serine protease (S10) family signature	125	137	IPR001563	GO:0004185\|GO:0006508
	Psa1g0377	476	PRINTS	Carboxypeptidase C serine protease (S10) family signature	138	148	IPR001563	GO:0004185\|GO:0006508
	Psa1g0377	476	PRINTS	Carboxypeptidase C serine protease (S10) family signature	174	199	IPR001563	GO:0004185\|GO:0006508
	Psa1g0377	476	PRINTS	Carboxypeptidase C serine protease (S10) family signature	431	444	IPR001563	GO:0004185\|GO:0006508
	Psa1g0377	476	PANTHER	SERINE CARBOXYPEPTIDASE-LIKE 29	14	468	-	-
	Psa1g0377	476	Gene3D	alpha/beta hydrolase	34	308	IPR029058	-
	Psa1g0377	476	Gene3D	-	367	461	-	-
	Psa1g0377	476	Gene3D	-	320	358	-	-
	Psa1g0377	476	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	14	468	IPR001563	GO:0004185\|GO:0006508
	Psa1g0377	476	ProSitePatterns	Serine carboxypeptidases, serine active site.	188	195	IPR018202	GO:0004185
	Psa1g0377	476	ProSitePatterns	Serine carboxypeptidases, histidine active site.	431	448	IPR033124	GO:0004185

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa1g0377	Psa-Chr1	23844812	23848651	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa1g0377	348	464	Calmodulin-binding Proteins	AT2G22960	26.271	7.07e-10	56.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa1g0377	K16297		-	gmx:100805227	718.768