Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0369 ATGCAATCTTTGGTTTCATCAAAGTTTCTTGTGCTTGTTGGAGAATCATTCCCCATGAGAAGGGCTTTATTGAATTCTAGGTTTGCTTGGTTTCATAGTAGTGTTCGGTGTACGAGCCATGTAGAACCCAATCATGGTTCTCTCACCCTTTCAACCCTTGGGTTTGAAACTGAAATTGAGCCTAAGATTAGAACTAAATCAAAAATGGTTAAGCCATTAGGTTCATCTGAGGGGTTCAAGAATAAAAGAAAACCCTTTGGAATTGGAACTGGTGAGAAGAAAGGAGTCAGGGTTTTGAGTAAACAAGAAATAGAGTCTGCCCCTTTTGCTGCTAAGTCGTTTTCGGAACTTGGTGTTCCTGAAGTTTTGATTGAGAGGCTAGGAAAAGCGGGTTTCGATGTTCCGACCGAGGTTCAATCTGCTGCGGTTCCGACCATTTTGAAGAACCGTGATGTTATAATTCAGTCGTATACGGGTTCGGGGAAAACATTGGCTTATCTCCTTCCCATATTGTCTGTTATTGGGCCGTTGAGAGGTGAGAATTCTGGCGGTGATGGTGACGGTGGTGAGACGGGGAAGAAATTGGGTGTTGAAGCGGTGATTGTTGCTCCGTCTAGGGAACTTGGAATGCAGATAGTGAGGGAGTTTGAGAAGATATTGGGAATGGATAATAAGAAAATGGTCCAGCAGCTTGTGGGAGGTGCGAACCGAACCAGGCAGGAAGAAGCTTTGAAGAAAAATAAACCTGCCATTGTTGTTGGTACGCCTGGTAGGATAGCTGAGCTTAGTGCAAGCGGGAAACTTCGTACACACGGCTGTCGGTATTTGGTATTGGATGAAGTTGATGAGCTTCTTTCGTTCAATTTCCGGGAAGACATGCACAGGTTATTGGAGCATGTTGGGAGGAGATCGGGTGCAGACCTAAACTCAAATGCTAAAAAGACTGAGCGTCAATTAATTATGGTTTCTGCAACCGTTCCGTTTTCGGTTGTAAGGGCAGCTAAAAGCTGGGGTTGTGACCCACTTCTTGTTCAAGCTAAGAAAATCGTACCGCTTGAAACTTTGTCTCCTGAGCCAGTCAAGTTGTCGCAGAGCTCGAATACTACCTCGTCTATGCCATCTAAGGCTGCAGTCGAGAGTCTACCTCCCGCATTGAAACACTATTATTGTGTAGTGAGGTTGCAACACAAAGTTGATACATTGAGAAGGTGTATTCATGCACTGGATGCAAAATTTGTGATAGTTTTCATGAATCATACTAAGCAGCTAAAGGATGTTGTCTTCAAACTGGAAGCTCGTGGGGTGAAAGCCGCAGAGTTACACGGAGATCTCGGGAAGCTTGGCAGGTCGACAACTCTGAAGAAATTCAAGAACGGCGAGGTTAGAGTTCTTGTGACAAATGAATTATCAGCAAGGGGTTTGGATGTAGCAGAATGTGATCTTGTGGTTAACCTCGAATTGCCGACAGATTCAATTCACTATGCACATCGAGCCGGTCGAACCGGTCGGCTTGGTAGGAACGGTACAGTGCTAACCATATGTGAAGAGTCAGAGGTTTTTGTTGTGAGAAAATTGAAGAAGCAACTTGAATTACCGATAGCATGCTGTAATTTTGTCGAAGGAAAGCTTCTTGTGACAGAAGAAGAAGAGCATACACTAACCGACACTTCTTGA 1674 0.4432 MQSLVSSKFLVLVGESFPMRRALLNSRFAWFHSSVRCTSHVEPNHGSLTLSTLGFETEIEPKIRTKSKMVKPLGSSEGFKNKRKPFGIGTGEKKGVRVLSKQEIESAPFAAKSFSELGVPEVLIERLGKAGFDVPTEVQSAAVPTILKNRDVIIQSYTGSGKTLAYLLPILSVIGPLRGENSGGDGDGGETGKKLGVEAVIVAPSRELGMQIVREFEKILGMDNKKMVQQLVGGANRTRQEEALKKNKPAIVVGTPGRIAELSASGKLRTHGCRYLVLDEVDELLSFNFREDMHRLLEHVGRRSGADLNSNAKKTERQLIMVSATVPFSVVRAAKSWGCDPLLVQAKKIVPLETLSPEPVKLSQSSNTTSSMPSKAAVESLPPALKHYYCVVRLQHKVDTLRRCIHALDAKFVIVFMNHTKQLKDVVFKLEARGVKAAELHGDLGKLGRSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLELPTDSIHYAHRAGRTGRLGRNGTVLTICEESEVFVVRKLKKQLELPIACCNFVEGKLLVTEEEEHTLTDTS* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0369 557 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 112 140 IPR014014 GO:0003724
Psa1g0369 557 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 15 533 - -
Psa1g0369 557 CDD DEADc 123 345 - -
Psa1g0369 557 Pfam Helicase conserved C-terminal domain 400 505 IPR001650 -
Psa1g0369 557 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 15 533 - -
Psa1g0369 557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 526 IPR027417 -
Psa1g0369 557 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 400 544 IPR001650 -
Psa1g0369 557 Gene3D - 91 346 IPR027417 -
Psa1g0369 557 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 143 344 IPR014001 -
Psa1g0369 557 Pfam DEAD/DEAH box helicase 136 330 IPR011545 GO:0003676|GO:0005524
Psa1g0369 557 CDD SF2_C_DEAD 385 514 - -
Psa1g0369 557 Gene3D - 382 538 IPR027417 -
Psa1g0369 557 SMART helicmild6 424 505 IPR001650 -
Psa1g0369 557 SMART ultradead3 131 363 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0369 Psa-Chr1 23480526 23483026 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0369 113 539 Eukaryotic Initiation Factors Gene Family AT3G19760 25.926 1.06e-46 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0369 - - gmx:100812968 849.351