Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g0361 ATGGCTCCAATGACTCTACCACCTGGATTCAGATTCCACCCTACAGATGAAGAACTTGTTGCTTACTATTTAGAAAGAAAAATAACAGGTAGAATCATTGAGCTTGACATCATTGCAGAAGTTGATCTCTACAAATGTGAACCATGGGATTTACCAGAAAAATCGTTTCTTCCAAGCAAGGATATGGAGTGGTATTTTTATAGTCCAAGAGACAGAAAGTATCCAAATGGGTCAAGAACAAATAGAGCAACAAGAGGTGGTTATTGGAAAGCAACTGGAAAAGATAGGGCAGTGAATTCTCAAAAGAGACAAGTTGGAATGAAGAAGACACTTGTTTATTACAAAGGTAGAGCACCTCATGGAATTAGAACCAACTGGGTTATGCATGAATATCGTCTTAATGAATCACACCCTGGTGCTTCTCTCTCTTCTTTGAAGGATTCATATTCATTGTGTCGAATTTTCAAGAAGACAATTCAAATTCCGACAAAAACTAATGAAGAAGAACAAGGTGAAGATACAAAGAAGGAAATGATGATGCAAGGGGAAGACTCAAGTGGAACTGAGATTTCAAGAGAAATAATGGAAACTATGGATGAAAAAGTTATTTATAATAATGAATATCCAAAGTTTCCATGTGATGCTTCATCTTCTGATGTCACTCAAGGAACATGTACACCAACAGAAACATGCAATAATAATATAACAGATGATTTTCATGCACAATTTGCTTGTGATGAAGCAAATAGTTCAACTATTGGATTAAGCTATCCCTCAAACTTATTTCAGGATATAGAAATACCTATGTATGGTGGCTTCCATAATCAATTTCCACAAACACCTTTTATGATGGAAGATTTTCCACAAATGGAGACAAAATCAATATTGAAGCCTGATATGAGTGAAAACTGCTTTTTGTACGACAAATACATTGGCTGTATGAATGGAACACTAGAAGAAATCATTTCTCTATGTTCCTCTCAAGATCATTCTGTGGCTTTTCCAATGCTATAG 1014 0.356 MAPMTLPPGFRFHPTDEELVAYYLERKITGRIIELDIIAEVDLYKCEPWDLPEKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATRGGYWKATGKDRAVNSQKRQVGMKKTLVYYKGRAPHGIRTNWVMHEYRLNESHPGASLSSLKDSYSLCRIFKKTIQIPTKTNEEEQGEDTKKEMMMQGEDSSGTEISREIMETMDEKVIYNNEYPKFPCDASSSDVTQGTCTPTETCNNNITDDFHAQFACDEANSSTIGLSYPSNLFQDIEIPMYGGFHNQFPQTPFMMEDFPQMETKSILKPDMSENCFLYDKYIGCMNGTLEEIISLCSSQDHSVAFPML* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g0361 337 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Psa1g0361 337 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Psa1g0361 337 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Psa1g0361 337 MobiDBLite consensus disorder prediction 164 188 - -
Psa1g0361 337 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Psa1g0361 337 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 166 - -
Psa1g0361 337 MobiDBLite consensus disorder prediction 164 182 - -
Psa1g0361 337 PANTHER NAC DOMAIN-CONTAINING PROTEIN-RELATED 1 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g0361 Psa-Chr1 21851061 21854982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g0361 1 323 NAC Transcription Factor Family AT1G54330 51.988 9.13e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa1g0361 NAM 4.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g0361 - - gmx:100808325 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g0361 1 21851061 21854982 Psa1g0361 1 21851061 21854982 ECH